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Items: 1 to 20 of 115

1.

Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity.

Fraser HB, Levy S, Chavan A, Shah HB, Perez JC, Zhou Y, Siegal ML, Sinha H.

Genome Res. 2012 Oct;22(10):1930-9. doi: 10.1101/gr.134080.111. Epub 2012 May 29.

2.

Evidence for widespread adaptive evolution of gene expression in budding yeast.

Fraser HB, Moses AM, Schadt EE.

Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2977-82. doi: 10.1073/pnas.0912245107. Epub 2010 Jan 28.

3.

The molecular mechanism of a cis-regulatory adaptation in yeast.

Chang J, Zhou Y, Hu X, Lam L, Henry C, Green EM, Kita R, Kobor MS, Fraser HB.

PLoS Genet. 2013;9(9):e1003813. doi: 10.1371/journal.pgen.1003813. Epub 2013 Sep 19.

4.

The genomic landscape of compensatory evolution.

Szamecz B, Boross G, Kalapis D, Kovács K, Fekete G, Farkas Z, Lázár V, Hrtyan M, Kemmeren P, Groot Koerkamp MJ, Rutkai E, Holstege FC, Papp B, Pál C.

PLoS Biol. 2014 Aug 26;12(8):e1001935. doi: 10.1371/journal.pbio.1001935. eCollection 2014 Aug.

5.

Systematic detection of polygenic cis-regulatory evolution.

Fraser HB, Babak T, Tsang J, Zhou Y, Zhang B, Mehrabian M, Schadt EE.

PLoS Genet. 2011 Mar;7(3):e1002023. doi: 10.1371/journal.pgen.1002023. Epub 2011 Mar 31.

6.

Polygenic and directional regulatory evolution across pathways in Saccharomyces.

Bullard JH, Mostovoy Y, Dudoit S, Brem RB.

Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5058-63. doi: 10.1073/pnas.0912959107. Epub 2010 Mar 1.

7.

Adaptation of Saccharomyces cerevisiae to saline stress through laboratory evolution.

Dhar R, Sägesser R, Weikert C, Yuan J, Wagner A.

J Evol Biol. 2011 May;24(5):1135-53. doi: 10.1111/j.1420-9101.2011.02249.x. Epub 2011 Mar 7.

8.

Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments.

Hong J, Gresham D.

PLoS Genet. 2014 Jan;10(1):e1004041. doi: 10.1371/journal.pgen.1004041. Epub 2014 Jan 9.

9.

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation.

Stephan W.

Mol Ecol. 2016 Jan;25(1):79-88. doi: 10.1111/mec.13288. Epub 2015 Jul 27. Review.

PMID:
26108992
10.

The evolution of gene expression QTL in Saccharomyces cerevisiae.

Ronald J, Akey JM.

PLoS One. 2007 Aug 1;2(7):e678.

11.

Inheritance of gene expression level and selective constraints on trans- and cis-regulatory changes in yeast.

Schaefke B, Emerson JJ, Wang TY, Lu MY, Hsieh LC, Li WH.

Mol Biol Evol. 2013 Sep;30(9):2121-33. doi: 10.1093/molbev/mst114. Epub 2013 Jun 22.

PMID:
23793114
12.

Concerted evolution of life stage performances signals recent selection on yeast nitrogen use.

Ibstedt S, Stenberg S, Bagés S, Gjuvsland AB, Salinas F, Kourtchenko O, Samy JK, Blomberg A, Omholt SW, Liti G, Beltran G, Warringer J.

Mol Biol Evol. 2015 Jan;32(1):153-61. doi: 10.1093/molbev/msu285. Epub 2014 Oct 27.

PMID:
25349282
13.

Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains.

Connelly CF, Skelly DA, Dunham MJ, Akey JM.

Mol Biol Evol. 2013 Jul;30(7):1605-13. doi: 10.1093/molbev/mst073. Epub 2013 Apr 25.

14.

A yeast hybrid provides insight into the evolution of gene expression regulation.

Tirosh I, Reikhav S, Levy AA, Barkai N.

Science. 2009 May 1;324(5927):659-62. doi: 10.1126/science.1169766.

15.

Multiple genomic changes associated with reorganization of gene regulation and adaptation in yeast.

David L, Ben-Harosh Y, Stolovicki E, Moore LS, Nguyen M, Tamse R, Dean J, Mancera E, Steinmetz LM, Braun E.

Mol Biol Evol. 2013 Jul;30(7):1514-26. doi: 10.1093/molbev/mst071. Epub 2013 Apr 14.

PMID:
23589456
16.

Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes.

Simola DF, Francis C, Sniegowski PD, Kim J.

Genome Biol. 2010;11(10):R105. doi: 10.1186/gb-2010-11-10-r105. Epub 2010 Oct 22.

17.

Natural sequence variants of yeast environmental sensors confer cell-to-cell expression variability.

Fehrmann S, Bottin-Duplus H, Leonidou A, Mollereau E, Barthelaix A, Wei W, Steinmetz LM, Yvert G.

Mol Syst Biol. 2013 Oct 8;9:695. doi: 10.1038/msb.2013.53.

18.

The locus of evolution: evo devo and the genetics of adaptation.

Hoekstra HE, Coyne JA.

Evolution. 2007 May;61(5):995-1016. Review.

PMID:
17492956
19.

Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast.

Chang YW, Robert Liu FG, Yu N, Sung HM, Yang P, Wang D, Huang CJ, Shih MC, Li WH.

Mol Biol Evol. 2008 Sep;25(9):1863-75. doi: 10.1093/molbev/msn138. Epub 2008 Jun 23.

20.

Diversification at transcription factor binding sites within a species and the implications for environmental adaptation.

Ames RM, Lovell SC.

Mol Biol Evol. 2011 Dec;28(12):3331-44. doi: 10.1093/molbev/msr167. Epub 2011 Jun 20.

PMID:
21693437

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