Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 97

1.

LeishCyc: a guide to building a metabolic pathway database and visualization of metabolomic data.

Saunders EC, MacRae JI, Naderer T, Ng M, McConville MJ, Likić VA.

Methods Mol Biol. 2012;881:505-29. doi: 10.1007/978-1-61779-827-6_17.

PMID:
22639224
2.

LeishCyc: a biochemical pathways database for Leishmania major.

Doyle MA, MacRae JI, De Souza DP, Saunders EC, McConville MJ, Likić VA.

BMC Syst Biol. 2009 Jun 5;3:57. doi: 10.1186/1752-0509-3-57.

3.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD.

Nucleic Acids Res. 2012 Jan;40(Database issue):D742-53. doi: 10.1093/nar/gkr1014.

4.

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD.

Nucleic Acids Res. 2008 Jan;36(Database issue):D623-31.

5.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD.

Nucleic Acids Res. 2010 Jan;38(Database issue):D473-9. doi: 10.1093/nar/gkp875.

6.

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.

Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahrén D, Tsoka S, Darzentas N, Kunin V, López-Bigas N.

Nucleic Acids Res. 2005 Oct 24;33(19):6083-9.

7.

Cyclone: java-based querying and computing with Pathway/Genome databases.

Le Fèvre F, Smidtas S, Schächter V.

Bioinformatics. 2007 May 15;23(10):1299-300.

8.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D471-80. doi: 10.1093/nar/gkv1164.

9.

Database resources in metabolomics: an overview.

Go EP.

J Neuroimmune Pharmacol. 2010 Mar;5(1):18-30. doi: 10.1007/s11481-009-9157-3. Review.

PMID:
19418229
10.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD.

Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103.

11.

Putting The Plant Metabolic Network pathway databases to work: going offline to gain new capabilities.

Dreher K.

Methods Mol Biol. 2014;1083:151-71. doi: 10.1007/978-1-62703-661-0_10.

PMID:
24218215
12.

Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction.

Dhanasekaran AR, Pearson JL, Ganesan B, Weimer BC.

BMC Bioinformatics. 2015 Feb 25;16:62. doi: 10.1186/s12859-015-0462-y.

13.

Computational Metabolomics Operations at BioCyc.org.

Karp PD, Billington R, Holland TA, Kothari A, Krummenacker M, Weaver D, Latendresse M, Paley S.

Metabolites. 2015 May 22;5(2):291-310. doi: 10.3390/metabo5020291.

14.

Special issue: integration of OMICs datasets into metabolic pathway analysis.

Kaleta C, de Figueiredo LF, Heiland I, Klamt S, Schuster S.

Biosystems. 2011 Aug;105(2):107-8. doi: 10.1016/j.biosystems.2011.05.008. No abstract available.

PMID:
21619911
15.

Reconstruction of metabolic pathways for the cattle genome.

Seo S, Lewin HA.

BMC Syst Biol. 2009 Mar 12;3:33. doi: 10.1186/1752-0509-3-33.

16.

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D511-6.

17.

Browsing metabolic and regulatory networks with BioCyc.

Latendresse M, Paley S, Karp PD.

Methods Mol Biol. 2012;804:197-216. doi: 10.1007/978-1-61779-361-5_11.

18.

An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks.

Stelzer M, Sun J, Kamphans T, Fekete SP, Zeng AP.

Integr Biol (Camb). 2011 Nov;3(11):1071-86. doi: 10.1039/c1ib00008j.

PMID:
21952610
19.

Analysis and comparison of metabolic pathway databases.

Wittig U, De Beuckelaer A.

Brief Bioinform. 2001 May;2(2):126-42.

20.

Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks.

May P, Christian N, Ebenhöh O, Weckwerth W, Walther D.

Methods Mol Biol. 2011;694:341-63. doi: 10.1007/978-1-60761-977-2_21.

PMID:
21082444
Items per page

Supplemental Content

Support Center