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Items: 1 to 20 of 99

1.

Computational tools for metabolic engineering.

Copeland WB, Bartley BA, Chandran D, Galdzicki M, Kim KH, Sleight SC, Maranas CD, Sauro HM.

Metab Eng. 2012 May;14(3):270-80. Review.

2.

Comparing methods for metabolic network analysis and an application to metabolic engineering.

Tomar N, De RK.

Gene. 2013 May 25;521(1):1-14. doi: 10.1016/j.gene.2013.03.017. Review.

PMID:
23537990
3.

Advanced stoichiometric analysis of metabolic networks of mammalian systems.

Orman MA, Berthiaume F, Androulakis IP, Ierapetritou MG.

Crit Rev Biomed Eng. 2011;39(6):511-34. Review.

4.

[Applications of elementary mode analysis in biological network and pathway analysis].

Zhao Q, Yu S, Shi J.

Sheng Wu Gong Cheng Xue Bao. 2013 Jun;29(6):701-15. Review. Chinese.

PMID:
24063231
5.

Using flux balance analysis to guide microbial metabolic engineering.

Curran KA, Crook NC, Alper HS.

Methods Mol Biol. 2012;834:197-216. doi: 10.1007/978-1-61779-483-4_13.

PMID:
22144361
6.

Complex systems in metabolic engineering.

Winkler JD, Erickson K, Choudhury A, Halweg-Edwards AL, Gill RT.

Curr Opin Biotechnol. 2015 Dec;36:107-14. doi: 10.1016/j.copbio.2015.08.002. Review.

PMID:
26319897
7.

OptFlux: an open-source software platform for in silico metabolic engineering.

Rocha I, Maia P, Evangelista P, Vilaça P, Soares S, Pinto JP, Nielsen J, Patil KR, Ferreira EC, Rocha M.

BMC Syst Biol. 2010 Apr 19;4:45. doi: 10.1186/1752-0509-4-45.

8.

Protein engineering for metabolic engineering: current and next-generation tools.

Marcheschi RJ, Gronenberg LS, Liao JC.

Biotechnol J. 2013 May;8(5):545-55. doi: 10.1002/biot.201200371. Review.

9.

Applications of genome-scale metabolic network model in metabolic engineering.

Kim B, Kim WJ, Kim DI, Lee SY.

J Ind Microbiol Biotechnol. 2015 Mar;42(3):339-48. doi: 10.1007/s10295-014-1554-9. Review.

PMID:
25465049
10.

Genome-scale modeling for metabolic engineering.

Simeonidis E, Price ND.

J Ind Microbiol Biotechnol. 2015 Mar;42(3):327-38. doi: 10.1007/s10295-014-1576-3. Review.

11.

The imminent role of protein engineering in synthetic biology.

Foo JL, Ching CB, Chang MW, Leong SS.

Biotechnol Adv. 2012 May-Jun;30(3):541-9. doi: 10.1016/j.biotechadv.2011.09.008. Review.

PMID:
21963685
12.

Computer-aided design for metabolic engineering.

Fernández-Castané A, Fehér T, Carbonell P, Pauthenier C, Faulon JL.

J Biotechnol. 2014 Dec 20;192 Pt B:302-13. doi: 10.1016/j.jbiotec.2014.03.029. Review.

PMID:
24704607
13.

Tools for metabolic engineering in Streptomyces.

Bekker V, Dodd A, Brady D, Rumbold K.

Bioengineered. 2014 Sep-Oct;5(5):293-9. doi: 10.4161/bioe.29935.

14.

Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints.

Yen JY, Nazem-Bokaee H, Freedman BG, Athamneh AI, Senger RS.

Biotechnol J. 2013 May;8(5):581-94. doi: 10.1002/biot.201200234.

PMID:
23460591
15.

Elementary flux modes in a nutshell: properties, calculation and applications.

Zanghellini J, Ruckerbauer DE, Hanscho M, Jungreuthmayer C.

Biotechnol J. 2013 Sep;8(9):1009-16. doi: 10.1002/biot.201200269. Review.

16.

Advances in de novo strain design using integrated systems and synthetic biology tools.

Ng CY, Khodayari A, Chowdhury A, Maranas CD.

Curr Opin Chem Biol. 2015 Oct;28:105-14. doi: 10.1016/j.cbpa.2015.06.026. Review.

PMID:
26177080
17.

Recent advances in elementary flux modes and yield space analysis as useful tools in metabolic network studies.

Horvat P, Koller M, Braunegg G.

World J Microbiol Biotechnol. 2015 Sep;31(9):1315-28. doi: 10.1007/s11274-015-1887-1. Review.

PMID:
26066363
18.

Into new territory: improved microbial synthesis through engineering of the essential metabolic network.

Lynch MD.

Curr Opin Biotechnol. 2016 Apr;38:106-11. doi: 10.1016/j.copbio.2016.01.009. Review.

PMID:
26874263
19.

Flux analysis and metabolomics for systematic metabolic engineering of microorganisms.

Toya Y, Shimizu H.

Biotechnol Adv. 2013 Nov;31(6):818-26. doi: 10.1016/j.biotechadv.2013.05.002. Review.

PMID:
23680193
20.

Evolutionary programming as a platform for in silico metabolic engineering.

Patil KR, Rocha I, Förster J, Nielsen J.

BMC Bioinformatics. 2005 Dec 23;6:308.

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