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Items: 1 to 20 of 219

1.

High-throughput, high-fidelity HLA genotyping with deep sequencing.

Wang C, Krishnakumar S, Wilhelmy J, Babrzadeh F, Stepanyan L, Su LF, Levinson D, Fernandez-Viña MA, Davis RW, Davis MM, Mindrinos M.

Proc Natl Acad Sci U S A. 2012 May 29;109(22):8676-81. doi: 10.1073/pnas.1206614109. Epub 2012 May 15.

2.

High-throughput multiplex HLA genotyping by next-generation sequencing using multi-locus individual tagging.

Ehrenberg PK, Geretz A, Baldwin KM, Apps R, Polonis VR, Robb ML, Kim JH, Michael NL, Thomas R.

BMC Genomics. 2014 Oct 6;15:864. doi: 10.1186/1471-2164-15-864.

3.

Towards allele-level human leucocyte antigens genotyping - assessing two next-generation sequencing platforms: Ion Torrent Personal Genome Machine and Illumina MiSeq.

Duke JL, Lind C, Mackiewicz K, Ferriola D, Papazoglou A, Derbeneva O, Wallace D, Monos DS.

Int J Immunogenet. 2015 Oct;42(5):346-58. doi: 10.1111/iji.12213. Epub 2015 Jun 27.

PMID:
26119888
4.

A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies.

Cao H, Wang Y, Zhang W, Chai X, Zhang X, Chen S, Yang F, Zhang C, Guo Y, Liu Y, Tang Z, Chen C, Xue Y, Zhen H, Xu Y, Rao B, Liu T, Zhao M, Zhang W, Li Y, Zhang X, Tellier LC, Krogh A, Kristiansen K, Wang J, Li J.

Hum Mutat. 2013 Dec;34(12):1715-20. doi: 10.1002/humu.22439. Epub 2013 Oct 7. Erratum in: Hum Mutat. 2014 Feb;35(2):270.

PMID:
24014314
5.

High-throughput DNA typing of HLA-A, -B, -C, and -DRB1 loci by a PCR-SSOP-Luminex method in the Japanese population.

Itoh Y, Mizuki N, Shimada T, Azuma F, Itakura M, Kashiwase K, Kikkawa E, Kulski JK, Satake M, Inoko H.

Immunogenetics. 2005 Nov;57(10):717-29. Epub 2005 Nov 8.

PMID:
16215732
6.

Cost-efficient multiplex PCR for routine genotyping of up to nine classical HLA loci in a single analytical run of multiple samples by next generation sequencing.

Ozaki Y, Suzuki S, Kashiwase K, Shigenari A, Okudaira Y, Ito S, Masuya A, Azuma F, Yabe T, Morishima S, Mitsunaga S, Satake M, Ota M, Morishima Y, Kulski JK, Saito K, Inoko H, Shiina T.

BMC Genomics. 2015 Apr 18;16:318. doi: 10.1186/s12864-015-1514-4.

7.

A reliable, high-resolution and high-throughput genotyping method for HLA-DRB1.

Yang F, Jiang F, Chai X, Guo Y, Lan Z, Yuan Y, Huang C, Zhu Z, Li H, Du B, Wang J, Zhou L, Chen Z, Yang L, Zhou M, Zeng H, Xu Y, Wang W.

Hum Immunol. 2015 Jun;76(6):397-401. doi: 10.1016/j.humimm.2015.04.003. Epub 2015 Apr 15.

PMID:
25890007
8.

HLA-DRB1, -DRB3, -DRB4 and -DRB5 genotyping at a super-high resolution level by long range PCR and high-throughput sequencing.

Ozaki Y, Suzuki S, Shigenari A, Okudaira Y, Kikkawa E, Oka A, Ota M, Mitsunaga S, Kulski JK, Inoko H, Shiina T.

Tissue Antigens. 2014 Jan;83(1):10-6. doi: 10.1111/tan.12258. Epub 2013 Nov 30.

PMID:
24355003
9.

Filling the gaps - the generation of full genomic sequences for 15 common and well-documented HLA class I alleles using next-generation sequencing technology.

Lind C, Ferriola D, Mackiewicz K, Papazoglou A, Sasson A, Monos D.

Hum Immunol. 2013 Mar;74(3):325-9. doi: 10.1016/j.humimm.2012.12.007. Epub 2012 Dec 13.

PMID:
23246585
10.

Advances in DNA sequencing technologies for high resolution HLA typing.

Cereb N, Kim HR, Ryu J, Yang SY.

Hum Immunol. 2015 Dec;76(12):923-7. doi: 10.1016/j.humimm.2015.09.015. Epub 2015 Sep 28.

PMID:
26423536
11.

Accurate HLA type inference using a weighted similarity graph.

Xie M, Li J, Jiang T.

BMC Bioinformatics. 2010 Dec 14;11 Suppl 11:S10. doi: 10.1186/1471-2105-11-S11-S10.

12.

High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ System for simplified amplicon library preparation.

Moonsamy PV, Williams T, Bonella P, Holcomb CL, Höglund BN, Hillman G, Goodridge D, Turenchalk GS, Blake LA, Daigle DA, Simen BB, Hamilton A, May AP, Erlich HA.

Tissue Antigens. 2013 Mar;81(3):141-9. doi: 10.1111/tan.12071.

PMID:
23398507
13.

Determining performance characteristics of an NGS-based HLA typing method for clinical applications.

Duke JL, Lind C, Mackiewicz K, Ferriola D, Papazoglou A, Gasiewski A, Heron S, Huynh A, McLaughlin L, Rogers M, Slavich L, Walker R, Monos DS.

HLA. 2016 Mar;87(3):141-52. doi: 10.1111/tan.12736. Epub 2016 Feb 16.

PMID:
26880737
14.

Predicting multiallelic genes using unphased and flanking single nucleotide polymorphisms.

Li SS, Wang H, Smith A, Zhang B, Zhang XC, Schoch G, Geraghty D, Hansen JA, Zhao LP.

Genet Epidemiol. 2011 Feb;35(2):85-92. doi: 10.1002/gepi.20549. Epub 2010 Dec 31.

15.

HLA class II DRB high resolution genotyping by pyrosequencing: comparison of group specific PCR and pyrosequencing primers.

Ringquist S, Alexander AM, Styche A, Pecoraro C, Rudert WA, Trucco M.

Hum Immunol. 2004 Feb;65(2):163-74.

PMID:
14969771
16.

Polymorphism of intron 4 in HLA-A, -B and -C genes.

Swelsen WT, Voorter CE, van den Berg-Loonen EM.

Tissue Antigens. 2003 Jun;61(6):475-83.

PMID:
12823771
17.

Polymorphisms of human leukocyte antigen genes in korean children with Kawasaki disease.

Oh JH, Han JW, Lee SJ, Lee KY, Suh BK, Koh DK, Lee JS, Oh CK, Kim TG, Choi HB.

Pediatr Cardiol. 2008 Mar;29(2):402-8. Epub 2007 Dec 7.

18.

An integrated genotyping approach for HLA and other complex genetic systems.

Nelson WC, Pyo CW, Vogan D, Wang R, Pyon YS, Hennessey C, Smith A, Pereira S, Ishitani A, Geraghty DE.

Hum Immunol. 2015 Dec;76(12):928-38. doi: 10.1016/j.humimm.2015.05.001. Epub 2015 May 28.

19.
20.

Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing.

Lank SM, Golbach BA, Creager HM, Wiseman RW, Keskin DB, Reinherz EL, Brusic V, O'Connor DH.

BMC Genomics. 2012 Aug 6;13:378. doi: 10.1186/1471-2164-13-378.

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