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Items: 1 to 20 of 61

1.

Prospects and limitations of full-text index structures in genome analysis.

Vyverman M, De Baets B, Fack V, Dawyndt P.

Nucleic Acids Res. 2012 Aug;40(15):6993-7015. doi: 10.1093/nar/gks408. Epub 2012 May 13. Review.

2.

SeqAn an efficient, generic C++ library for sequence analysis.

Döring A, Weese D, Rausch T, Reinert K.

BMC Bioinformatics. 2008 Jan 9;9:11. doi: 10.1186/1471-2105-9-11.

3.

Optimization techniques for string selection and comparison problems in genomics. Applying integer programming and heuristic algorithms for improved solutions.

Meneses CN, Oliveira CA, Pardalos PM.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):81-7. No abstract available.

PMID:
15971845
4.

Toward a new era in sequencing.

Ziebolz B, Droege M.

Biotechnol Annu Rev. 2007;13:1-26. Review.

PMID:
17875471
5.

PTPan--overcoming memory limitations in oligonucleotide string matching for primer/probe design.

Eissler T, Hodges CP, Meier H.

Bioinformatics. 2011 Oct 15;27(20):2797-805. doi: 10.1093/bioinformatics/btr483. Epub 2011 Aug 19.

PMID:
21856736
6.

Efficient construction of an assembly string graph using the FM-index.

Simpson JT, Durbin R.

Bioinformatics. 2010 Jun 15;26(12):i367-73. doi: 10.1093/bioinformatics/btq217.

7.

A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.

Khan Z, Bloom JS, Kruglyak L, Singh M.

Bioinformatics. 2009 Jul 1;25(13):1609-16. doi: 10.1093/bioinformatics/btp275. Epub 2009 Apr 23.

8.

G-InforBIO: integrated system for microbial genomics.

Tanaka N, Abe T, Miyazaki S, Sugawara H.

BMC Bioinformatics. 2006 Aug 4;7:368.

9.

Lecture notes: 2010 and beyond, the decade of high-performance computing for the next-generation sequence analysis.

Yang MQ, Yang JY.

Int J Comput Biol Drug Des. 2009;2(2):204-6. doi: 10.1504/IJCBDD.2009.028824. Epub 2009 Oct 3.

PMID:
20090171
10.

Genome variation discovery with high-throughput sequencing data.

Dalca AV, Brudno M.

Brief Bioinform. 2010 Jan;11(1):3-14. doi: 10.1093/bib/bbp058. Epub 2010 Jan 6.

PMID:
20053733
11.

[Development of antituberculous drugs: current status and future prospects].

Tomioka H, Namba K.

Kekkaku. 2006 Dec;81(12):753-74. Review. Japanese.

PMID:
17240921
12.

Synergy between sequence and size in large-scale genomics.

Gregory TR.

Nat Rev Genet. 2005 Sep;6(9):699-708. Review.

PMID:
16151375
13.

DELIMINATE--a fast and efficient method for loss-less compression of genomic sequences: sequence analysis.

Mohammed MH, Dutta A, Bose T, Chadaram S, Mande SS.

Bioinformatics. 2012 Oct 1;28(19):2527-9. Epub 2012 Jul 25.

PMID:
22833526
14.

Current state-of-art of sequencing technologies for plant genomics research.

Thudi M, Li Y, Jackson SA, May GD, Varshney RK.

Brief Funct Genomics. 2012 Jan;11(1):3-11. doi: 10.1093/bfgp/elr045. Review.

PMID:
22345601
15.

Advances in sequence analysis.

Califano A.

Curr Opin Struct Biol. 2001 Jun;11(3):330-3. Review.

PMID:
11406383
16.

Scoring-and-unfolding trimmed tree assembler: concepts, constructs and comparisons.

Narzisi G, Mishra B.

Bioinformatics. 2011 Jan 15;27(2):153-60. doi: 10.1093/bioinformatics/btq646. Epub 2010 Nov 18.

PMID:
21088026
17.

Contribution of genomics to the understanding of physiological functions.

Hocquette JF, Cassar-Malek I, Scalbert A, Guillou F.

J Physiol Pharmacol. 2009 Oct;60 Suppl 3:5-16. Review.

PMID:
19996478
18.

Predictor correlation impacts machine learning algorithms: implications for genomic studies.

Nicodemus KK, Malley JD.

Bioinformatics. 2009 Aug 1;25(15):1884-90. doi: 10.1093/bioinformatics/btp331. Epub 2009 May 21.

PMID:
19460890
19.

Software agents in molecular computational biology.

Keele JW, Wray JE.

Brief Bioinform. 2005 Dec;6(4):370-9.

PMID:
16420735
20.

Simultaneous identification of long similar substrings in large sets of sequences.

Kleffe J, Möller F, Wittig B.

BMC Bioinformatics. 2007 May 24;8 Suppl 5:S7.

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