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Items: 1 to 20 of 102

1.

Targeted proteome investigation via selected reaction monitoring mass spectrometry.

Maiolica A, Jünger MA, Ezkurdia I, Aebersold R.

J Proteomics. 2012 Jun 27;75(12):3495-513. doi: 10.1016/j.jprot.2012.04.048. Epub 2012 May 8. Review.

PMID:
22579752
2.

Reproducibility of combinatorial peptide ligand libraries for proteome capture evaluated by selected reaction monitoring.

Di Girolamo F, Righetti PG, Soste M, Feng Y, Picotti P.

J Proteomics. 2013 Aug 26;89:215-26. doi: 10.1016/j.jprot.2013.05.037. Epub 2013 Jun 7.

PMID:
23747450
3.

2DE: the phoenix of proteomics.

Oliveira BM, Coorssen JR, Martins-de-Souza D.

J Proteomics. 2014 Jun 2;104:140-50. doi: 10.1016/j.jprot.2014.03.035. Epub 2014 Apr 3. Review.

PMID:
24704856
4.

A repository of assays to quantify 10,000 human proteins by SWATH-MS.

Rosenberger G, Koh CC, Guo T, Röst HL, Kouvonen P, Collins BC, Heusel M, Liu Y, Caron E, Vichalkovski A, Faini M, Schubert OT, Faridi P, Ebhardt HA, Matondo M, Lam H, Bader SL, Campbell DS, Deutsch EW, Moritz RL, Tate S, Aebersold R.

Sci Data. 2014 Sep 16;1:140031. doi: 10.1038/sdata.2014.31. eCollection 2014.

5.

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.

Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig J, Walther D, Weckwerth W.

BMC Bioinformatics. 2007 Jun 23;8:216.

6.

A geometric approach for the alignment of liquid chromatography-mass spectrometry data.

Lange E, Gröpl C, Schulz-Trieglaff O, Leinenbach A, Huber C, Reinert K.

Bioinformatics. 2007 Jul 1;23(13):i273-81.

PMID:
17646306
7.

Key issues in the acquisition and analysis of qualitative and quantitative mass spectrometry data for peptide-centric proteomic experiments.

Thompson AJ, Abu M, Hanger DP.

Amino Acids. 2012 Sep;43(3):1075-85. doi: 10.1007/s00726-012-1287-x. Epub 2012 Jul 22. Review.

PMID:
22821266
8.

Investigation of protein-RNA interactions by mass spectrometry--Techniques and applications.

Schmidt C, Kramer K, Urlaub H.

J Proteomics. 2012 Jun 27;75(12):3478-94. doi: 10.1016/j.jprot.2012.04.030. Epub 2012 May 2.

PMID:
22575267
9.

Current trends in computational inference from mass spectrometry-based proteomics.

Webb-Robertson BJ, Cannon WR.

Brief Bioinform. 2007 Sep;8(5):304-17. Epub 2007 Jun 20. Review.

PMID:
17584764
10.

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.

Gillet LC, Navarro P, Tate S, Röst H, Selevsek N, Reiter L, Bonner R, Aebersold R.

Mol Cell Proteomics. 2012 Jun;11(6):O111.016717. doi: 10.1074/mcp.O111.016717. Epub 2012 Jan 18.

11.

mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry.

Teo G, Kim S, Tsou CC, Collins B, Gingras AC, Nesvizhskii AI, Choi H.

J Proteomics. 2015 Nov 3;129:108-120. doi: 10.1016/j.jprot.2015.09.013. Epub 2015 Sep 15.

12.
13.

Exploring how the organelles are organized.

Eisenstein M.

Nat Methods. 2006 Jun;3(6):420-1.

PMID:
16773738
14.

Phosphotyrosine mediated protein interactions of the discoidin domain receptor 1.

Lemeer S, Bluwstein A, Wu Z, Leberfinger J, Müller K, Kramer K, Kuster B.

J Proteomics. 2012 Jun 27;75(12):3465-77. doi: 10.1016/j.jprot.2011.10.007. Epub 2011 Oct 26.

PMID:
22057045
15.

Proteomics in chromatin biology and epigenetics: Elucidation of post-translational modifications of histone proteins by mass spectrometry.

Sidoli S, Cheng L, Jensen ON.

J Proteomics. 2012 Jun 27;75(12):3419-33. doi: 10.1016/j.jprot.2011.12.029. Epub 2012 Jan 3. Review.

PMID:
22234360
16.

Mass spectrometry for nutritional peptidomics: How to analyze food bioactives and their health effects.

Panchaud A, Affolter M, Kussmann M.

J Proteomics. 2012 Jun 27;75(12):3546-59. doi: 10.1016/j.jprot.2011.12.022. Epub 2011 Dec 30.

PMID:
22227401
17.

Mass spectrometry-based metabolomics.

Dettmer K, Aronov PA, Hammock BD.

Mass Spectrom Rev. 2007 Jan-Feb;26(1):51-78. Review.

18.

Shotgun proteome analysis utilising mixed mode (reversed phase-anion exchange chromatography) in conjunction with reversed phase liquid chromatography mass spectrometry analysis.

Phillips HL, Williamson JC, van Elburg KA, Snijders AP, Wright PC, Dickman MJ.

Proteomics. 2010 Aug;10(16):2950-60. doi: 10.1002/pmic.200900669.

PMID:
20662100
19.

Quantitative proteome mapping of nitrotyrosines.

Bigelow DJ, Qian WJ.

Methods Enzymol. 2008;440:191-205. doi: 10.1016/S0076-6879(07)00811-7. Review.

PMID:
18423218
20.

Automated selected reaction monitoring software for accurate label-free protein quantification.

Teleman J, Karlsson C, Waldemarson S, Hansson K, James P, Malmström J, Levander F.

J Proteome Res. 2012 Jul 6;11(7):3766-73. doi: 10.1021/pr300256x. Epub 2012 Jun 14.

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