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Items: 1 to 20 of 98

1.

Detecting long tandem duplications in genomic sequences.

Audemard E, Schiex T, Faraut T.

BMC Bioinformatics. 2012 May 8;13:83. doi: 10.1186/1471-2105-13-83.

2.

The hidden duplication past of Arabidopsis thaliana.

Simillion C, Vandepoele K, Van Montagu MC, Zabeau M, Van de Peer Y.

Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13627-32. Epub 2002 Oct 8.

3.

Characterization and evolution of microRNA genes derived from repetitive elements and duplication events in plants.

Sun J, Zhou M, Mao Z, Li C.

PLoS One. 2012;7(4):e34092. doi: 10.1371/journal.pone.0034092. Epub 2012 Apr 16.

4.

Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli.

Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH.

Plant Physiol. 2008 Oct;148(2):993-1003. doi: 10.1104/pp.108.122457. Epub 2008 Aug 20.

5.

Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis.

Zhang PG, Huang SZ, Pin AL, Adams KL.

Mol Biol Evol. 2010 Jul;27(7):1686-97. doi: 10.1093/molbev/msq054. Epub 2010 Feb 25.

PMID:
20185454
6.

Investigating ancient duplication events in the Arabidopsis genome.

Raes J, Vandepoele K, Simillion C, Saeys Y, Van de Peer Y.

J Struct Funct Genomics. 2003;3(1-4):117-29.

PMID:
12836691
7.

The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana.

Cannon SB, Mitra A, Baumgarten A, Young ND, May G.

BMC Plant Biol. 2004 Jun 1;4:10.

8.
9.

Different patterns of gene structure divergence following gene duplication in Arabidopsis.

Wang Y, Tan X, Paterson AH.

BMC Genomics. 2013 Sep 24;14:652. doi: 10.1186/1471-2164-14-652.

10.

A comparative phylogenetic approach for dating whole genome duplication events.

Chapman BA, Bowers JE, Schulze SR, Paterson AH.

Bioinformatics. 2004 Jan 22;20(2):180-5.

PMID:
14734308
11.
12.

Sorting by reversals, block interchanges, tandem duplications, and deletions.

Bader M.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S9. doi: 10.1186/1471-2105-10-S1-S9.

13.

Unique genes in plants: specificities and conserved features throughout evolution.

Armisén D, Lecharny A, Aubourg S.

BMC Evol Biol. 2008 Oct 10;8:280. doi: 10.1186/1471-2148-8-280.

15.

Fractionation of synteny in a genomic region containing tandemly duplicated genes across glycine max, Medicago truncatula, and Arabidopsis thaliana.

Schlueter JA, Scheffler BE, Jackson S, Shoemaker RC.

J Hered. 2008 Jul-Aug;99(4):390-5. doi: 10.1093/jhered/esn010. Epub 2008 Mar 2.

PMID:
18316321
16.

DAGchainer: a tool for mining segmental genome duplications and synteny.

Haas BJ, Delcher AL, Wortman JR, Salzberg SL.

Bioinformatics. 2004 Dec 12;20(18):3643-6. Epub 2004 Jul 9.

PMID:
15247098
17.

Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice.

Vandepoele K, Simillion C, Van de Peer Y.

Trends Genet. 2002 Dec;18(12):606-8.

PMID:
12446138
18.

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

Seoighe C, Gehring C.

Trends Genet. 2004 Oct;20(10):461-4.

PMID:
15363896
19.

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

Górecki P, Burleigh GJ, Eulenstein O.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S15. doi: 10.1186/1471-2105-12-S1-S15.

20.

Genome rearrangements with duplications.

Bader M.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S27. doi: 10.1186/1471-2105-11-S1-S27.

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