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Items: 1 to 20 of 110

1.

Solution-based targeted genomic enrichment for precious DNA samples.

Shearer AE, Hildebrand MS, Smith RJ.

BMC Biotechnol. 2012 May 4;12:20. doi: 10.1186/1472-6750-12-20.

2.

Pre-capture multiplexing improves efficiency and cost-effectiveness of targeted genomic enrichment.

Shearer AE, Hildebrand MS, Ravi H, Joshi S, Guiffre AC, Novak B, Happe S, LeProust EM, Smith RJ.

BMC Genomics. 2012 Nov 14;13:618. doi: 10.1186/1471-2164-13-618.

3.

[Establishment of target genomic DNA capturing system for next generation sequencing].

Chen D, Zhang W, Zhu ZD, Huang Y, Wang P, Zhou BB, Yang XN, Xiao HS, Zhang QH.

Yi Chuan. 2010 Dec;32(12):1296-303. Chinese.

PMID:
21513157
4.

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing.

Gnirke A, Melnikov A, Maguire J, Rogov P, LeProust EM, Brockman W, Fennell T, Giannoukos G, Fisher S, Russ C, Gabriel S, Jaffe DB, Lander ES, Nusbaum C.

Nat Biotechnol. 2009 Feb;27(2):182-9. doi: 10.1038/nbt.1523. Epub 2009 Feb 1.

5.

96-plex molecular barcoding for the Illumina Genome Analyzer.

Kozarewa I, Turner DJ.

Methods Mol Biol. 2011;733:279-98. doi: 10.1007/978-1-61779-089-8_20.

PMID:
21431778
6.

Comparison of three targeted enrichment strategies on the SOLiD sequencing platform.

Hedges DJ, Guettouche T, Yang S, Bademci G, Diaz A, Andersen A, Hulme WF, Linker S, Mehta A, Edwards YJ, Beecham GW, Martin ER, Pericak-Vance MA, Zuchner S, Vance JM, Gilbert JR.

PLoS One. 2011 Apr 29;6(4):e18595. doi: 10.1371/journal.pone.0018595.

7.

Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing.

Hodges E, Rooks M, Xuan Z, Bhattacharjee A, Benjamin Gordon D, Brizuela L, Richard McCombie W, Hannon GJ.

Nat Protoc. 2009;4(6):960-74. doi: 10.1038/nprot.2009.68. Epub 2009 May 28.

8.

Exome sequencing from nanogram amounts of starting DNA: comparing three approaches.

Rykalina VN, Shadrin AA, Amstislavskiy VS, Rogaev EI, Lehrach H, Borodina TA.

PLoS One. 2014 Jul 3;9(7):e101154. doi: 10.1371/journal.pone.0101154. eCollection 2014.

9.

Amplification-free library preparation for paired-end Illumina sequencing.

Kozarewa I, Turner DJ.

Methods Mol Biol. 2011;733:257-66. doi: 10.1007/978-1-61779-089-8_18.

PMID:
21431776
10.

Improved multiple displacement amplification (iMDA) and ultraclean reagents.

Motley ST, Picuri JM, Crowder CD, Minich JJ, Hofstadler SA, Eshoo MW.

BMC Genomics. 2014 Jun 6;15:443. doi: 10.1186/1471-2164-15-443.

11.

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing.

Ramos E, Levinson BT, Chasnoff S, Hughes A, Young AL, Thornton K, Li A, Vallania FL, Province M, Druley TE.

BMC Genomics. 2012 Dec 6;13:683. doi: 10.1186/1471-2164-13-683.

12.

Multiplexed array-based and in-solution genomic enrichment for flexible and cost-effective targeted next-generation sequencing.

Harakalova M, Mokry M, Hrdlickova B, Renkens I, Duran K, van Roekel H, Lansu N, van Roosmalen M, de Bruijn E, Nijman IJ, Kloosterman WP, Cuppen E.

Nat Protoc. 2011 Nov 3;6(12):1870-86. doi: 10.1038/nprot.2011.396.

PMID:
22051800
13.

Comparison of solution-based exome capture methods for next generation sequencing.

Sulonen AM, Ellonen P, Almusa H, Lepistö M, Eldfors S, Hannula S, Miettinen T, Tyynismaa H, Salo P, Heckman C, Joensuu H, Raivio T, Suomalainen A, Saarela J.

Genome Biol. 2011 Sep 28;12(9):R94. doi: 10.1186/gb-2011-12-9-r94.

14.

Advancing genetic testing for deafness with genomic technology.

Shearer AE, Black-Ziegelbein EA, Hildebrand MS, Eppsteiner RW, Ravi H, Joshi S, Guiffre AC, Sloan CM, Happe S, Howard SD, Novak B, Deluca AP, Taylor KR, Scheetz TE, Braun TA, Casavant TL, Kimberling WJ, Leproust EM, Smith RJ.

J Med Genet. 2013 Sep;50(9):627-34. doi: 10.1136/jmedgenet-2013-101749. Epub 2013 Jun 26.

15.

Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing.

Teer JK, Bonnycastle LL, Chines PS, Hansen NF, Aoyama N, Swift AJ, Abaan HO, Albert TJ; NISC Comparative Sequencing Program, Margulies EH, Green ED, Collins FS, Mullikin JC, Biesecker LG.

Genome Res. 2010 Oct;20(10):1420-31. doi: 10.1101/gr.106716.110. Epub 2010 Sep 1.

16.

Enabling technologies of genomic-scale sequence enrichment for targeted high-throughput sequencing.

Summerer D.

Genomics. 2009 Dec;94(6):363-8. doi: 10.1016/j.ygeno.2009.08.012. Epub 2009 Aug 29. Review.

17.

Flow cytometry for enrichment and titration in massively parallel DNA sequencing.

Sandberg J, Ståhl PL, Ahmadian A, Bjursell MK, Lundeberg J.

Nucleic Acids Res. 2009 May;37(8):e63. doi: 10.1093/nar/gkp188. Epub 2009 Mar 20.

18.

Detection of rare genomic variants from pooled sequencing using SPLINTER.

Vallania F, Ramos E, Cresci S, Mitra RD, Druley TE.

J Vis Exp. 2012 Jun 23;(64). pii: 3943. doi: 10.3791/3943.

19.

Targeted sequencing library preparation by genomic DNA circularization.

Myllykangas S, Natsoulis G, Bell JM, Ji HP.

BMC Biotechnol. 2011 Dec 14;11:122. doi: 10.1186/1472-6750-11-122.

20.

Performance of microarray and liquid based capture methods for target enrichment for massively parallel sequencing and SNP discovery.

Kiialainen A, Karlberg O, Ahlford A, Sigurdsson S, Lindblad-Toh K, Syvänen AC.

PLoS One. 2011 Feb 9;6(2):e16486. doi: 10.1371/journal.pone.0016486.

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