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Items: 1 to 20 of 409

1.

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A.

Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.

2.

Tablet--next generation sequence assembly visualization.

Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D.

Bioinformatics. 2010 Feb 1;26(3):401-2. doi: 10.1093/bioinformatics/btp666. Epub 2009 Dec 4.

3.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

4.

Unipro UGENE: a unified bioinformatics toolkit.

Okonechnikov K, Golosova O, Fursov M; UGENE team.

Bioinformatics. 2012 Apr 15;28(8):1166-7. doi: 10.1093/bioinformatics/bts091. Epub 2012 Feb 24.

PMID:
22368248
5.

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.

PMID:
17332025
6.

Pegasys: software for executing and integrating analyses of biological sequences.

Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF.

BMC Bioinformatics. 2004 Apr 19;5:40.

7.

Automated programming for bioinformatics algorithm deployment.

Alterovitz G, Jiwaji A, Ramoni MF.

Bioinformatics. 2008 Feb 1;24(3):450-1. doi: 10.1093/bioinformatics/btm602. Epub 2008 Jan 3.

PMID:
18174185
8.

MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution.

Cai JJ, Smith DK, Xia X, Yuen KY.

BMC Bioinformatics. 2005 Mar 22;6:64.

9.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

10.

dCAS: a desktop application for cDNA sequence annotation.

Guo Y, Ribeiro JM, Anderson JM, Bour S.

Bioinformatics. 2009 May 1;25(9):1195-6. doi: 10.1093/bioinformatics/btp129. Epub 2009 Mar 24.

11.

Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming.

Ibarra IL, Melo F.

Bioinformatics. 2010 Jul 1;26(13):1664-5. doi: 10.1093/bioinformatics/btq252. Epub 2010 May 14.

12.

BioWord: a sequence manipulation suite for Microsoft Word.

Anzaldi LJ, Muñoz-Fernández D, Erill I.

BMC Bioinformatics. 2012 Jun 7;13:124. doi: 10.1186/1471-2105-13-124.

13.

Geneious plugins for the access of PlasmoDB and PiroplasmaDB databases.

Ma C, Gunther S, Cooke B, Coppel RL.

Parasitol Int. 2013 Apr;62(2):134-6. doi: 10.1016/j.parint.2012.11.003. Epub 2012 Nov 24.

PMID:
23183102
14.

HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

BMC Bioinformatics. 2005 Apr 6;6:86.

15.

JCell--a Java-based framework for inferring regulatory networks from time series data.

Spieth C, Supper J, Streichert F, Speer N, Zell A.

Bioinformatics. 2006 Aug 15;22(16):2051-2. Epub 2006 Jun 16.

PMID:
16782725
16.
17.

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto.

Brown KR, Otasek D, Ali M, McGuffin MJ, Xie W, Devani B, Toch IL, Jurisica I.

Bioinformatics. 2009 Dec 15;25(24):3327-9. doi: 10.1093/bioinformatics/btp595. Epub 2009 Oct 16.

18.

BIAS: Bioinformatics Integrated Application Software.

Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z.

Bioinformatics. 2005 Apr 15;21(8):1745-6. Epub 2004 Nov 30.

PMID:
15572471
19.

PedVizApi: a Java API for the interactive, visual analysis of extended pedigrees.

Fuchsberger C, Falchi M, Forer L, Pramstaller PP.

Bioinformatics. 2008 Jan 15;24(2):279-81. Epub 2007 Nov 22.

PMID:
18033791
20.

Designing and executing scientific workflows with a programmable integrator.

Chagoyen M, Kurul ME, De-Alarcón PA, Carazo JM, Gupta A.

Bioinformatics. 2004 Sep 1;20(13):2092-100. Epub 2004 Apr 1.

PMID:
15059834

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