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Items: 1 to 20 of 90

1.

Exploration of multi-state conformational dynamics and underlying global functional landscape of maltose binding protein.

Wang Y, Tang C, Wang E, Wang J.

PLoS Comput Biol. 2012;8(4):e1002471. doi: 10.1371/journal.pcbi.1002471. Epub 2012 Apr 19.

2.

Accessing a hidden conformation of the maltose binding protein using accelerated molecular dynamics.

Bucher D, Grant BJ, Markwick PR, McCammon JA.

PLoS Comput Biol. 2011 Apr;7(4):e1002034. doi: 10.1371/journal.pcbi.1002034. Epub 2011 Apr 21.

3.

How maltose influences structural changes to bind to maltose-binding protein: results from umbrella sampling simulation.

Mascarenhas NM, Kästner J.

Proteins. 2013 Feb;81(2):185-98. doi: 10.1002/prot.24174. Epub 2012 Sep 29.

PMID:
22933379
4.

Induced fit or conformational selection? The role of the semi-closed state in the maltose binding protein.

Bucher D, Grant BJ, McCammon JA.

Biochemistry. 2011 Dec 6;50(48):10530-9. doi: 10.1021/bi201481a. Epub 2011 Nov 10.

5.
6.

The energetic cost of domain reorientation in maltose-binding protein as studied by NMR and fluorescence spectroscopy.

Millet O, Hudson RP, Kay LE.

Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12700-5. Epub 2003 Oct 6.

7.

Ligand-free open-closed transitions of periplasmic binding proteins: the case of glutamine-binding protein.

Bermejo GA, Strub MP, Ho C, Tjandra N.

Biochemistry. 2010 Mar 9;49(9):1893-902. doi: 10.1021/bi902045p.

8.

A salt-bridge motif involved in ligand binding and large-scale domain motions of the maltose-binding protein.

Stockner T, Vogel HJ, Tieleman DP.

Biophys J. 2005 Nov;89(5):3362-71. Epub 2005 Sep 2.

9.

A single-molecule dissection of ligand binding to a protein with intrinsic dynamics.

Kim E, Lee S, Jeon A, Choi JM, Lee HS, Hohng S, Kim HS.

Nat Chem Biol. 2013 May;9(5):313-8. doi: 10.1038/nchembio.1213. Epub 2013 Mar 17.

PMID:
23502425
10.

Protein conformational dynamics dictate the binding affinity for a ligand.

Seo MH, Park J, Kim E, Hohng S, Kim HS.

Nat Commun. 2014 Apr 24;5:3724. doi: 10.1038/ncomms4724.

PMID:
24758940
11.

Role of water in ligand binding to maltose-binding protein: insight from a new docking protocol based on the 3D-RISM-KH molecular theory of solvation.

Huang W, Blinov N, Wishart DS, Kovalenko A.

J Chem Inf Model. 2015 Feb 23;55(2):317-28. doi: 10.1021/ci500520q. Epub 2015 Jan 26.

PMID:
25545470
12.

Mapping the conformational stability of maltose binding protein at the residue scale using nuclear magnetic resonance hydrogen exchange experiments.

Merstorf C, Maciejak O, Mathé J, Pastoriza-Gallego M, Thiebot B, Clément MJ, Pelta J, Auvray L, Curmi PA, Savarin P.

Biochemistry. 2012 Nov 6;51(44):8919-30. doi: 10.1021/bi3003605. Epub 2012 Oct 24.

PMID:
23046344
13.

Single molecule conformational dynamics of adenylate kinase: energy landscape, structural correlations, and transition state ensembles.

Lu Q, Wang J.

J Am Chem Soc. 2008 Apr 9;130(14):4772-83. doi: 10.1021/ja0780481. Epub 2008 Mar 14.

PMID:
18338887
14.

Conformational flexibility of the leucine binding protein examined by protein domain coarse-grained molecular dynamics.

Siuda I, Thøgersen L.

J Mol Model. 2013 Nov;19(11):4931-45. doi: 10.1007/s00894-013-1991-9. Epub 2013 Sep 19.

PMID:
24048570
15.

Effects of ligand binding on the internal dynamics of maltose-binding protein.

Döring K, Surrey T, Nollert P, Jähnig F.

Eur J Biochem. 1999 Dec;266(2):477-83.

16.

Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism.

Arora K, Brooks CL 3rd.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18496-501. Epub 2007 Nov 13.

17.

Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR.

Tang C, Schwieters CD, Clore GM.

Nature. 2007 Oct 25;449(7165):1078-82.

PMID:
17960247
18.

The dynamics of the MBP-MalFGK(2) interaction: a prototype for binding protein dependent ABC-transporter systems.

Shilton BH.

Biochim Biophys Acta. 2008 Sep;1778(9):1772-80. Epub 2007 Sep 19. Review.

19.
20.

Role of denaturation in maltose binding protein translocation dynamics.

Bacci M, Chinappi M, Casciola CM, Cecconi F.

J Phys Chem B. 2012 Apr 12;116(14):4255-62. doi: 10.1021/jp300143x. Epub 2012 Apr 3.

PMID:
22429088

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