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Items: 1 to 20 of 137

1.

An image analysis toolbox for high-throughput C. elegans assays.

Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE.

Nat Methods. 2012 Apr 22;9(7):714-6. doi: 10.1038/nmeth.1984.

2.

Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.

Zhan M, Crane MM, Entchev EV, Caballero A, Fernandes de Abreu DA, Ch'ng Q, Lu H.

PLoS Comput Biol. 2015 Apr 24;11(4):e1004194. doi: 10.1371/journal.pcbi.1004194. eCollection 2015 Apr.

3.

Morphology-guided graph search for untangling objects: C. elegans analysis.

Raviv TR, Ljosa V, Conery AL, Ausubel FM, Carpenter AE, Golland P, Wählby C.

Med Image Comput Comput Assist Interv. 2010;13(Pt 3):634-41.

4.

Workflow and metrics for image quality control in large-scale high-content screens.

Bray MA, Fraser AN, Hasaka TP, Carpenter AE.

J Biomol Screen. 2012 Feb;17(2):266-74. doi: 10.1177/1087057111420292. Epub 2011 Sep 28.

5.

DetecTiff: a novel image analysis routine for high-content screening microscopy.

Gilbert DF, Meinhof T, Pepperkok R, Runz H.

J Biomol Screen. 2009 Sep;14(8):944-55. doi: 10.1177/1087057109339523. Epub 2009 Jul 29.

PMID:
19641223
6.

Fluorescence-Based High-Throughput and Targeted Image Acquisition and Analysis for Phenotypic Screening.

Gunkel M, Eberle JP, Erfle H.

Methods Mol Biol. 2017;1563:269-280. doi: 10.1007/978-1-4939-6810-7_17.

PMID:
28324614
7.

High-content screening: imaging, analysis, and implementation.

McGee J.

J Biomol Screen. 2012 Feb;17(2):275-7. doi: 10.1177/1087057111432529. No abstract available.

PMID:
22282877
8.

Straightening Caenorhabditis elegans images.

Peng H, Long F, Liu X, Kim SK, Myers EW.

Bioinformatics. 2008 Jan 15;24(2):234-42. Epub 2007 Nov 19.

9.

Unsupervised modeling of cell morphology dynamics for time-lapse microscopy.

Zhong Q, Busetto AG, Fededa JP, Buhmann JM, Gerlich DW.

Nat Methods. 2012 May 27;9(7):711-3. doi: 10.1038/nmeth.2046.

PMID:
22635062
10.

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Kamentsky L, Jones TR, Fraser A, Bray MA, Logan DJ, Madden KL, Ljosa V, Rueden C, Eliceiri KW, Carpenter AE.

Bioinformatics. 2011 Apr 15;27(8):1179-80. doi: 10.1093/bioinformatics/btr095. Epub 2011 Feb 23.

11.

Continuous-flow C. elegans fluorescence expression analysis with real-time image processing through microfluidics.

Yan Y, Boey D, Ng LT, Gruber J, Bettiol A, Thakor NV, Chen CH.

Biosens Bioelectron. 2016 Mar 15;77:428-34. doi: 10.1016/j.bios.2015.09.045. Epub 2015 Sep 28.

PMID:
26452079
12.

Tracking the swimming motions of C. elegans worms with applications in aging studies.

Restif C, Metaxas D.

Med Image Comput Comput Assist Interv. 2008;11(Pt 1):35-42.

PMID:
18979729
13.

DevStaR: high-throughput quantification of C. elegans developmental stages.

White AG, Lees B, Kao HL, Cipriani PG, Munarriz E, Paaby AB, Erickson K, Guzman S, Rattanakorn K, Sontag E, Geiger D, Gunsalus KC, Piano F.

IEEE Trans Med Imaging. 2013 Oct;32(10):1791-803. doi: 10.1109/TMI.2013.2265092. Epub 2013 May 29.

PMID:
23722463
14.

A fast, fully automated cell segmentation algorithm for high-throughput and high-content screening.

Fenistein D, Lenseigne B, Christophe T, Brodin P, Genovesio A.

Cytometry A. 2008 Oct;73(10):958-64. doi: 10.1002/cyto.a.20627.

15.

Automated Microarray Image Analysis Toolbox for MATLAB.

White AM, Daly DS, Willse AR, Protic M, Chandler DP.

Bioinformatics. 2005 Sep 1;21(17):3578-9. Epub 2005 Jul 26.

PMID:
16046497
16.

Automated classification of mitotic phenotypes of human cells using fluorescent proteins.

Harder N, Eils R, Rohr K.

Methods Cell Biol. 2008;85:539-54.

PMID:
18155478
17.

Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification.

Logan DJ, Shan J, Bhatia SN, Carpenter AE.

Methods. 2016 Mar 1;96:6-11. doi: 10.1016/j.ymeth.2015.12.002. Epub 2015 Dec 11.

18.

Computational restoration of fluorescence images: noise reduction, deconvolution, and pattern recognition.

Wang YL.

Methods Cell Biol. 2003;72:337-48. Review. No abstract available.

PMID:
14719339
19.

Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images.

Selinummi J, Ruusuvuori P, Podolsky I, Ozinsky A, Gold E, Yli-Harja O, Aderem A, Shmulevich I.

PLoS One. 2009 Oct 22;4(10):e7497. doi: 10.1371/journal.pone.0007497.

20.

Digital autofocus methods for automated microscopy.

Shen F, Hodgson L, Hahn K.

Methods Enzymol. 2006;414:620-32. Review.

PMID:
17110214

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