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Types, levels and patterns of low-copy DNA sequence divergence, and phylogenetic implications, for Gossypium genome types.

Rong J, Wang X, Schulze SR, Compton RO, Williams-Coplin TD, Goff V, Chee PW, Paterson AH.

Heredity (Edinb). 2012 May;108(5):500-6. doi: 10.1038/hdy.2011.111.


Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.

Page JT, Huynh MD, Liechty ZS, Grupp K, Stelly D, Hulse AM, Ashrafi H, Van Deynze A, Wendel JF, Udall JA.

G3 (Bethesda). 2013 Oct 3;3(10):1809-18. doi: 10.1534/g3.113.007229.


[A and D genome evolution in Gossypium revealed using SSR molecular markers].

Guo WZ, Wang K, Zhang TZ.

Yi Chuan Xue Bao. 2003 Feb;30(2):183-8. Chinese.


Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J.

Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798.


Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton.

Zhao XP, Si Y, Hanson RE, Crane CF, Price HJ, Stelly DM, Wendel JF, Paterson AH.

Genome Res. 1998 May;8(5):479-92. Erratum in: Genome Res 1998 Jun;8(6):682.


Independent Domestication of Two Old World Cotton Species.

Renny-Byfield S, Page JT, Udall JA, Sanders WS, Peterson DG, Arick MA 2nd, Grover CE, Wendel JF.

Genome Biol Evol. 2016 Jul 2;8(6):1940-7. doi: 10.1093/gbe/evw129.


A preliminary analysis of genome structure and composition in Gossypium hirsutum.

Guo W, Cai C, Wang C, Zhao L, Wang L, Zhang T.

BMC Genomics. 2008 Jul 1;9:314. doi: 10.1186/1471-2164-9-314.


Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.).

Abdurakhmonov IY, Buriev ZT, Logan-Young CJ, Abdukarimov A, Pepper AE.

BMC Plant Biol. 2010 Jun 20;10:119. doi: 10.1186/1471-2229-10-119.


Simple sequence repeat genetic linkage maps of A-genome diploid cotton (Gossypium arboreum).

Ma XX, Zhou BL, Lü YH, Guo WZ, Zhang TZ.

J Integr Plant Biol. 2008 Apr;50(4):491-502. doi: 10.1111/j.1744-7909.2008.00636.x.


A phylogenetic analysis of indel dynamics in the cotton genus.

Grover CE, Yu Y, Wing RA, Paterson AH, Wendel JF.

Mol Biol Evol. 2008 Jul;25(7):1415-28. doi: 10.1093/molbev/msn085. Epub 2008 Apr 9.


Molecular evolution of the plastid genome during diversification of the cotton genus.

Chen Z, Grover CE, Li P, Wang Y, Nie H, Zhao Y, Wang M, Liu F, Zhou Z, Wang X, Cai X, Wang K, Wendel JF, Hua J.

Mol Phylogenet Evol. 2017 Jul;112:268-276. doi: 10.1016/j.ympev.2017.04.014. Epub 2017 Apr 13.


Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.).

Lee MK, Zhang Y, Zhang M, Goebel M, Kim HJ, Triplett BA, Stelly DM, Zhang HB.

BMC Genomics. 2013 Mar 28;14:208. doi: 10.1186/1471-2164-14-208.


Gene copy number evolution during tetraploid cotton radiation.

Rong J, Feltus FA, Liu L, Lin L, Paterson AH.

Heredity (Edinb). 2010 Nov;105(5):463-72. doi: 10.1038/hdy.2009.192. Epub 2010 Feb 17.


Phylogenetic analysis of Gossypium L. using restriction fragment length polymorphism of repeated sequences.

Zhang M, Rong Y, Lee MK, Zhang Y, Stelly DM, Zhang HB.

Mol Genet Genomics. 2015 Oct;290(5):1859-72. doi: 10.1007/s00438-015-1039-1. Epub 2015 Apr 16.


Homoeologous nonreciprocal recombination in polyploid cotton.

Salmon A, Flagel L, Ying B, Udall JA, Wendel JF.

New Phytol. 2010 Apr;186(1):123-34. doi: 10.1111/j.1469-8137.2009.03093.x. Epub 2009 Nov 19.


Genetic mapping of EST-derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton.

Han ZG, Guo WZ, Song XL, Zhang TZ.

Mol Genet Genomics. 2004 Oct;272(3):308-27. Epub 2004 Sep 11.


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