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Items: 1 to 20 of 155

1.

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.

Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.

Mol Cell Proteomics. 2012 May;11(5):148-59. doi: 10.1074/mcp.M111.016857. Epub 2012 Apr 14.

2.

Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.

Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.

Mol Cell Proteomics. 2013 Mar;12(3):825-31. doi: 10.1074/mcp.O112.027094. Epub 2012 Dec 24.

3.

Improved quantitative mass spectrometry methods for characterizing complex ubiquitin signals.

Phu L, Izrael-Tomasevic A, Matsumoto ML, Bustos D, Dynek JN, Fedorova AV, Bakalarski CE, Arnott D, Deshayes K, Dixit VM, Kelley RF, Vucic D, Kirkpatrick DS.

Mol Cell Proteomics. 2011 May;10(5):M110.003756. doi: 10.1074/mcp.M110.003756. Epub 2010 Nov 3.

4.

Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.

Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.

J Proteome Res. 2012 Sep 7;11(9):4722-32. doi: 10.1021/pr300536k. Epub 2012 Aug 15.

5.

Analysis of ubiquitinated proteome by quantitative mass spectrometry.

Na CH, Peng J.

Methods Mol Biol. 2012;893:417-29. doi: 10.1007/978-1-61779-885-6_26.

6.

A COFRADIC protocol to study protein ubiquitination.

Stes E, Laga M, Walton A, Samyn N, Timmerman E, De Smet I, Goormachtig S, Gevaert K.

J Proteome Res. 2014 Jun 6;13(6):3107-13. doi: 10.1021/pr4012443. Epub 2014 May 20.

PMID:
24816145
7.

Deubiquitinases Modulate Platelet Proteome Ubiquitination, Aggregation, and Thrombosis.

Gupta N, Li W, McIntyre TM.

Arterioscler Thromb Vasc Biol. 2015 Dec;35(12):2657-66. doi: 10.1161/ATVBAHA.115.306054. Epub 2015 Oct 15.

8.

Peptide level immunoaffinity enrichment enhances ubiquitination site identification on individual proteins.

Anania VG, Pham VC, Huang X, Masselot A, Lill JR, Kirkpatrick DS.

Mol Cell Proteomics. 2014 Jan;13(1):145-56. doi: 10.1074/mcp.M113.031062. Epub 2013 Oct 18.

9.

Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry.

Meierhofer D, Wang X, Huang L, Kaiser P.

J Proteome Res. 2008 Oct;7(10):4566-76. doi: 10.1021/pr800468j. Epub 2008 Sep 10.

10.

Autoregulation of the 26S proteasome by in situ ubiquitination.

Jacobson AD, MacFadden A, Wu Z, Peng J, Liu CW.

Mol Biol Cell. 2014 Jun 15;25(12):1824-35. doi: 10.1091/mbc.E13-10-0585. Epub 2014 Apr 17.

11.

A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.

Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.

Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. doi: 10.1074/mcp.M111.013284. Epub 2011 Sep 1.

12.

Hsp90 inhibition induces both protein-specific and global changes in the ubiquitinome.

Quadroni M, Potts A, Waridel P.

J Proteomics. 2015 Apr 29;120:215-29. doi: 10.1016/j.jprot.2015.02.020. Epub 2015 Mar 14.

PMID:
25782750
13.

A comprehensive method for detecting ubiquitinated substrates using TR-TUBE.

Yoshida Y, Saeki Y, Murakami A, Kawawaki J, Tsuchiya H, Yoshihara H, Shindo M, Tanaka K.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4630-5. doi: 10.1073/pnas.1422313112. Epub 2015 Mar 31.

14.

PEST motif sequence regulating human NANOG for proteasomal degradation.

Ramakrishna S, Suresh B, Lim KH, Cha BH, Lee SH, Kim KS, Baek KH.

Stem Cells Dev. 2011 Sep;20(9):1511-9. doi: 10.1089/scd.2010.0410. Epub 2011 Mar 12.

PMID:
21299413
15.

Unraveling the ubiquitin-regulated signaling networks by mass spectrometry-based proteomics.

Low TY, Magliozzi R, Guardavaccaro D, Heck AJ.

Proteomics. 2013 Feb;13(3-4):526-37. doi: 10.1002/pmic.201200244. Epub 2012 Nov 26. Review.

PMID:
23019148
16.

The complexity of recognition of ubiquitinated substrates by the 26S proteasome.

Ciechanover A, Stanhill A.

Biochim Biophys Acta. 2014 Jan;1843(1):86-96. doi: 10.1016/j.bbamcr.2013.07.007. Epub 2013 Jul 18. Review.

17.

Proteolysis targeting peptide (PROTAP) strategy for protein ubiquitination and degradation.

Zheng J, Tan C, Xue P, Cao J, Liu F, Tan Y, Jiang Y.

Biochem Biophys Res Commun. 2016 Feb 19;470(4):936-40. doi: 10.1016/j.bbrc.2016.01.158. Epub 2016 Jan 28.

PMID:
26826379
18.

A data set of human endogenous protein ubiquitination sites.

Shi Y, Chan DW, Jung SY, Malovannaya A, Wang Y, Qin J.

Mol Cell Proteomics. 2011 May;10(5):M110.002089. doi: 10.1074/mcp.M110.002089. Epub 2010 Oct 24.

19.

Profiling lysine ubiquitination by selective enrichment of ubiquitin remnant-containing peptides.

Xu G, Deglincerti A, Paige JS, Jaffrey SR.

Methods Mol Biol. 2014;1174:57-71. doi: 10.1007/978-1-4939-0944-5_4.

PMID:
24947374
20.

Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.

Xu G, Paige JS, Jaffrey SR.

Nat Biotechnol. 2010 Aug;28(8):868-73. doi: 10.1038/nbt.1654. Epub 2010 Jul 18.

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