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Items: 1 to 20 of 102

1.

CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images.

Pound MP, French AP, Wells DM, Bennett MJ, Pridmore TP.

Plant Cell. 2012 Apr;24(4):1353-61. doi: 10.1105/tpc.112.096289. Epub 2012 Apr 3.

2.

Quantification of fluorescent reporters in plant cells.

Pound M, French AP, Wells DM.

Methods Mol Biol. 2015;1242:123-31. doi: 10.1007/978-1-4939-1902-4_11.

PMID:
25408449
3.

An analytical tool that quantifies cellular morphology changes from three-dimensional fluorescence images.

Haass-Koffler CL, Naeemuddin M, Bartlett SE.

J Vis Exp. 2012 Aug 31;(66):e4233. doi: 10.3791/4233.

4.

Calcium dynamics in root cells of Arabidopsis thaliana visualized with selective plane illumination microscopy.

Costa A, Candeo A, Fieramonti L, Valentini G, Bassi A.

PLoS One. 2013 Oct 16;8(10):e75646. doi: 10.1371/journal.pone.0075646. eCollection 2013.

5.

Analysis of Expression Gradients of Developmental Regulators in Arabidopsis thaliana Roots.

Ercoli MF, Vena R, Goldy C, Palatnik JF, Rodríguez RE.

Methods Mol Biol. 2018;1863:3-17. doi: 10.1007/978-1-4939-8772-6_1. Erratum in: Methods Mol Biol. 2018;1863:E1.

PMID:
30324589
6.

A protocol to analyse cellular dynamics during plant development.

de Reuille PB, Bohn-Courseau I, Godin C, Traas J.

Plant J. 2005 Dec;44(6):1045-53.

7.

Separation of ballistic and diffusive fluorescence photons in confocal Light-Sheet Microscopy of Arabidopsis roots.

Meinert T, Tietz O, Palme KJ, Rohrbach A.

Sci Rep. 2016 Aug 24;6:30378. doi: 10.1038/srep30378.

8.

Quantitation of ER Structure and Function.

Fricker M, Heaton L, Jones N, Obara B, Müller SJ, Meyer AJ.

Methods Mol Biol. 2018;1691:43-66. doi: 10.1007/978-1-4939-7389-7_5.

PMID:
29043669
9.

Using Cell-ID 1.4 with R for microscope-based cytometry.

Chernomoretz A, Bush A, Yu R, Gordon A, Colman-Lerner A.

Curr Protoc Mol Biol. 2008 Oct;Chapter 14:Unit 14.18. doi: 10.1002/0471142727.mb1418s84.

10.

Methods and applications of three-color confocal imaging.

Paddock SW, Hazen EJ, De Vries PJ.

Biotechniques. 1997 Jan;22(1):120-2, 124-6.

11.

Analysis of nuclear organization with TANGO, software for high-throughput quantitative analysis of 3D fluorescence microscopy images.

Ollion J, Cochennec J, Loll F, Escudé C, Boudier T.

Methods Mol Biol. 2015;1228:203-22. doi: 10.1007/978-1-4939-1680-1_16.

PMID:
25311132
12.

Quantitative image analysis tool to study the plasma membrane localization of proteins and cortical actin in neuroendocrine cells.

Kurps J, Broeke JH, Cijsouw T, Kompatscher A, van Weering JR, de Wit H.

J Neurosci Methods. 2014 Oct 30;236:1-10. doi: 10.1016/j.jneumeth.2014.07.022. Epub 2014 Aug 7.

PMID:
25109903
13.

Nuquantus: Machine learning software for the characterization and quantification of cell nuclei in complex immunofluorescent tissue images.

Gross P, Honnorat N, Varol E, Wallner M, Trappanese DM, Sharp TE, Starosta T, Duran JM, Koller S, Davatzikos C, Houser SR.

Sci Rep. 2016 Mar 23;6:23431. doi: 10.1038/srep23431.

14.

A computational framework for cortical microtubule dynamics in realistically shaped plant cells.

Chakrabortty B, Blilou I, Scheres B, Mulder BM.

PLoS Comput Biol. 2018 Feb 2;14(2):e1005959. doi: 10.1371/journal.pcbi.1005959. eCollection 2018 Feb.

15.

Whole-mount confocal imaging of nuclei in giant feeding cells induced by root-knot nematodes in Arabidopsis.

Vieira P, Engler G, de Almeida Engler J.

New Phytol. 2012 Jul;195(2):488-96. doi: 10.1111/j.1469-8137.2012.04175.x. Epub 2012 May 22.

16.

Determination of Dynamics of Plant Plasma Membrane Proteins with Fluorescence Recovery and Raster Image Correlation Spectroscopy.

Laňková M, Humpolíčková J, Vosolsobě S, Cit Z, Lacek J, Čovan M, Čovanová M, Hof M, Petrášek J.

Microsc Microanal. 2016 Apr;22(2):290-9. doi: 10.1017/S1431927616000568. Epub 2016 Apr 4.

PMID:
27041337
17.

Quantitative Microscopic Analysis of Plasma Membrane Receptor Dynamics in Living Plant Cells.

Luo Y, Russinova E.

Methods Mol Biol. 2017;1564:121-132. doi: 10.1007/978-1-4939-6813-8_10.

PMID:
28124250
18.

Colocalization of fluorescent markers in confocal microscope images of plant cells.

French AP, Mills S, Swarup R, Bennett MJ, Pridmore TP.

Nat Protoc. 2008;3(4):619-28. doi: 10.1038/nprot.2008.31.

PMID:
18388944
19.

Live tracking of moving samples in confocal microscopy for vertically grown roots.

von Wangenheim D, Hauschild R, Fendrych M, Barone V, Benková E, Friml J.

Elife. 2017 Jun 19;6. pii: e26792. doi: 10.7554/eLife.26792.

20.

Quantitative colocalization analysis of confocal fluorescence microscopy images.

Zinchuk V, Grossenbacher-Zinchuk O.

Curr Protoc Cell Biol. 2011 Sep;Chapter 4:Unit4.19. doi: 10.1002/0471143030.cb0419s52.

PMID:
21898338

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