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Items: 1 to 20 of 49

1.

Reanalysis and simulation suggest a phylogenetic microarray does not accurately profile microbial communities.

Midgley DJ, Greenfield P, Shaw JM, Oytam Y, Li D, Kerr CA, Hendry P.

PLoS One. 2012;7(3):e33875. doi: 10.1371/journal.pone.0033875. Epub 2012 Mar 22.

2.

Environmental microarray analyses of Antarctic soil microbial communities.

Yergeau E, Schoondermark-Stolk SA, Brodie EL, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL, Kowalchuk GA.

ISME J. 2009 Mar;3(3):340-51. doi: 10.1038/ismej.2008.111. Epub 2008 Nov 20.

PMID:
19020556
3.

High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment.

Handley KM, Wrighton KC, Piceno YM, Andersen GL, DeSantis TZ, Williams KH, Wilkins MJ, N'Guessan AL, Peacock A, Bargar J, Long PE, Banfield JF.

FEMS Microbiol Ecol. 2012 Jul;81(1):188-204. doi: 10.1111/j.1574-6941.2012.01363.x. Epub 2012 Apr 13.

4.

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity.

He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, Hemme CL, Li X, Wu L, Gentry TJ, Yin Y, Liebich J, Hazen TC, Zhou J.

ISME J. 2010 Sep;4(9):1167-79. doi: 10.1038/ismej.2010.46. Epub 2010 Apr 29.

PMID:
20428223
5.

Application of phylogenetic microarray analysis to discriminate sources of fecal pollution.

Dubinsky EA, Esmaili L, Hulls JR, Cao Y, Griffith JF, Andersen GL.

Environ Sci Technol. 2012 Apr 17;46(8):4340-7. doi: 10.1021/es2040366. Epub 2012 Apr 4.

PMID:
22360280
6.

Feasibility of transferring fluorescent in situ hybridization probes to an 18S rRNA gene phylochip and mapping of signal intensities.

Metfies K, Medlin LK.

Appl Environ Microbiol. 2008 May;74(9):2814-21. doi: 10.1128/AEM.02122-07. Epub 2008 Mar 7.

7.

PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa.

Weinert N, Piceno Y, Ding GC, Meincke R, Heuer H, Berg G, Schloter M, Andersen G, Smalla K.

FEMS Microbiol Ecol. 2011 Mar;75(3):497-506. doi: 10.1111/j.1574-6941.2010.01025.x. Epub 2011 Jan 11.

8.

Spatial scaling of functional gene diversity across various microbial taxa.

Zhou J, Kang S, Schadt CW, Garten CT Jr.

Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7768-73. doi: 10.1073/pnas.0709016105. Epub 2008 May 28.

9.

16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales".

Loy A, Schulz C, Lücker S, Schöpfer-Wendels A, Stoecker K, Baranyi C, Lehner A, Wagner M.

Appl Environ Microbiol. 2005 Mar;71(3):1373-86.

10.

Application of a nifH oligonucleotide microarray for profiling diversity of N2-fixing microorganisms in marine microbial mats.

Moisander PH, Shiue L, Steward GF, Jenkins BD, Bebout BM, Zehr JP.

Environ Microbiol. 2006 Oct;8(10):1721-35.

PMID:
16958753
11.

Selective progressive response of soil microbial community to wild oat roots.

DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.

ISME J. 2009 Feb;3(2):168-78. doi: 10.1038/ismej.2008.103. Epub 2008 Nov 13.

PMID:
19005498
12.

A fast and flexible approach to oligonucleotide probe design for genomes and gene families.

Feng S, Tillier ER.

Bioinformatics. 2007 May 15;23(10):1195-202. Epub 2007 Mar 28.

PMID:
17392329
13.

OligoArrayDb: pangenomic oligonucleotide microarray probe sets database.

Rouillard JM, Gulari E.

Nucleic Acids Res. 2009 Jan;37(Database issue):D938-41. doi: 10.1093/nar/gkn761. Epub 2008 Oct 23.

14.

'FloraArray' for screening of specific DNA probes representing the characteristics of a certain microbial community.

Yokoi T, Kaku Y, Suzuki H, Ohta M, Ikuta H, Isaka K, Sumino T, Wagatsuma M.

FEMS Microbiol Lett. 2007 Aug;273(2):166-71. Epub 2007 Jul 4.

15.

Hybridization of an ITS-based macroarray with ITS community probes for characterization of complex communities of fungi and fungal-like protists.

Izzo AD, Mazzola M.

Mycol Res. 2009 Jun-Jul;113(Pt 6-7):802-12. doi: 10.1016/j.mycres.2008.11.020. Epub 2009 Mar 13.

PMID:
19286456
16.

The generation and maintenance of diversity in microbial communities.

Fierer N, Lennon JT.

Am J Bot. 2011 Mar;98(3):439-48. doi: 10.3732/ajb.1000498. Epub 2011 Feb 17. Review.

17.

Development and experimental validation of a nifH oligonucleotide microarray to study diazotrophic communities in a glacier forefield.

Duc L, Neuenschwander S, Rehrauer H, Wagner U, Sobek J, Schlapbach R, Zeyer J.

Environ Microbiol. 2009 Aug;11(8):2179-89. doi: 10.1111/j.1462-2920.2009.01945.x. Epub 2009 May 18.

PMID:
19453699
18.

Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray.

Schatz MC, Phillippy AM, Gajer P, DeSantis TZ, Andersen GL, Ravel J.

Appl Environ Microbiol. 2010 Aug;76(16):5636-8. doi: 10.1128/AEM.00303-10. Epub 2010 Jun 25.

19.

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome.

Cox MJ, Huang YJ, Fujimura KE, Liu JT, McKean M, Boushey HA, Segal MR, Brodie EL, Cabana MD, Lynch SV.

PLoS One. 2010 Jan 18;5(1):e8745. doi: 10.1371/journal.pone.0008745.

20.

Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray.

Rich VI, Pham VD, Eppley J, Shi Y, DeLong EF.

Environ Microbiol. 2011 Jan;13(1):116-34. doi: 10.1111/j.1462-2920.2010.02314.x.

PMID:
20695878

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