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Items: 1 to 20 of 103

1.

Broad-specificity mRNA-rRNA complementarity in efficient protein translation.

Barendt PA, Shah NA, Barendt GA, Sarkar CA.

PLoS Genet. 2012;8(3):e1002598. doi: 10.1371/journal.pgen.1002598. Epub 2012 Mar 22.

2.

Evidence for context-dependent complementarity of non-Shine-Dalgarno ribosome binding sites to Escherichia coli rRNA.

Barendt PA, Shah NA, Barendt GA, Kothari PA, Sarkar CA.

ACS Chem Biol. 2013 May 17;8(5):958-66. doi: 10.1021/cb3005726. Epub 2013 Mar 7.

3.

Inability of Prevotella bryantii to form a functional Shine-Dalgarno interaction reflects unique evolution of ribosome binding sites in Bacteroidetes.

Accetto T, Avguštin G.

PLoS One. 2011;6(8):e22914. doi: 10.1371/journal.pone.0022914. Epub 2011 Aug 12.

4.

Local absence of secondary structure permits translation of mRNAs that lack ribosome-binding sites.

Scharff LB, Childs L, Walther D, Bock R.

PLoS Genet. 2011 Jun;7(6):e1002155. doi: 10.1371/journal.pgen.1002155. Epub 2011 Jun 23.

5.

Escherichia coli mRNAs with strong Shine/Dalgarno sequences also contain 5' end sequences complementary to domain # 17 on the 16S ribosomal RNA.

Golshani A, Krogan NJ, Xu J, Pacal M, Yang XC, Ivanov I, Providenti MA, Ganoza MC, Ivanov IG, AbouHaidar MG.

Biochem Biophys Res Commun. 2004 Apr 16;316(4):978-83.

PMID:
15044080
6.

Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translation.

Komarova AV, Tchufistova LS, Supina EV, Boni IV.

RNA. 2002 Sep;8(9):1137-47.

7.

A second putative mRNA binding site on the Escherichia coli ribosome.

Ivanov IG, Alexandrova RA, Dragulev BP, AbouHaidar MG.

Gene. 1995 Jul 4;160(1):75-9.

PMID:
7628721
9.
10.

ARC-1, a sequence element complementary to an internal 18S rRNA segment, enhances translation efficiency in plants when present in the leader or intercistronic region of mRNAs.

Akbergenov RZh, Zhanybekova SSh, Kryldakov RV, Zhigailov A, Polimbetova NS, Hohn T, Iskakov BK.

Nucleic Acids Res. 2004 Jan 12;32(1):239-47. Print 2004.

12.
13.

rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments.

O'Connor PB, Li GW, Weissman JS, Atkins JF, Baranov PV.

Bioinformatics. 2013 Jun 15;29(12):1488-91. doi: 10.1093/bioinformatics/btt184. Epub 2013 Apr 19.

14.

The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria.

Li GW, Oh E, Weissman JS.

Nature. 2012 Mar 28;484(7395):538-41. doi: 10.1038/nature10965.

15.

[Extensive complementarity of the Shine-Dalgarno region and 3'-terminal sequence of 16S ribosomal RNA is inefficient for translation in vivo].

Komarova AV, Chufistova LS, Supina EV, Boni IV.

Bioorg Khim. 2001 Jul-Aug;27(4):282-90. Russian.

PMID:
11558262
16.

Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes.

Osada Y, Saito R, Tomita M.

Bioinformatics. 1999 Jul-Aug;15(7-8):578-81.

PMID:
10487865
18.
19.

Coevolution of RNA helix stability and Shine-Dalgarno complementarity in a translational start region.

Olsthoorn RC, Zoog S, van Duin J.

Mol Microbiol. 1995 Jan;15(2):333-9.

PMID:
7746154
20.

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