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Items: 1 to 20 of 117

1.
2.

Quantitative proteomics targeting classes of motif-containing peptides using immunoaffinity-based mass spectrometry.

Olsson N, James P, Borrebaeck CA, Wingren C.

Mol Cell Proteomics. 2012 Aug;11(8):342-54. doi: 10.1074/mcp.M111.016238. Epub 2012 Apr 27.

3.

Isobaric labeling-based relative quantification in shotgun proteomics.

Rauniyar N, Yates JR 3rd.

J Proteome Res. 2014 Dec 5;13(12):5293-309. doi: 10.1021/pr500880b. Epub 2014 Nov 4. Review.

4.

Convergence of ubiquitylation and phosphorylation signaling in rapamycin-treated yeast cells.

Iesmantavicius V, Weinert BT, Choudhary C.

Mol Cell Proteomics. 2014 Aug;13(8):1979-92. doi: 10.1074/mcp.O113.035683. Epub 2014 Jun 24.

5.

Maximizing early detection of esophageal squamous cell carcinoma via SILAC-proteomics.

Lee KK, Todorova K, Mandinova A.

Cancer Biol Ther. 2010 Oct 15;10(8):811-3. Epub 2010 Oct 15. No abstract available.

6.

Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation.

Hebert AS, Merrill AE, Stefely JA, Bailey DJ, Wenger CD, Westphall MS, Pagliarini DJ, Coon JJ.

Mol Cell Proteomics. 2013 Nov;12(11):3360-9. doi: 10.1074/mcp.M113.032011. Epub 2013 Jul 23.

7.

General statistical framework for quantitative proteomics by stable isotope labeling.

Navarro P, Trevisan-Herraz M, Bonzon-Kulichenko E, Núñez E, Martínez-Acedo P, Pérez-Hernández D, Jorge I, Mesa R, Calvo E, Carrascal M, Hernáez ML, García F, Bárcena JA, Ashman K, Abian J, Gil C, Redondo JM, Vázquez J.

J Proteome Res. 2014 Mar 7;13(3):1234-47. doi: 10.1021/pr4006958. Epub 2014 Feb 10.

PMID:
24512137
8.

A comprehensive proteomic and phosphoproteomic analysis of yeast deletion mutants of 14-3-3 orthologs and associated effects of rapamycin.

Paulo JA, Gygi SP.

Proteomics. 2015 Jan;15(2-3):474-86. doi: 10.1002/pmic.201400155. Epub 2014 Dec 17.

9.

Neutron-encoded mass signatures for multiplexed proteome quantification.

Hebert AS, Merrill AE, Bailey DJ, Still AJ, Westphall MS, Strieter ER, Pagliarini DJ, Coon JJ.

Nat Methods. 2013 Apr;10(4):332-4. doi: 10.1038/nmeth.2378. Epub 2013 Feb 24.

10.

System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap.

Nagaraj N, Kulak NA, Cox J, Neuhauser N, Mayr K, Hoerning O, Vorm O, Mann M.

Mol Cell Proteomics. 2012 Mar;11(3):M111.013722. doi: 10.1074/mcp.M111.013722. Epub 2011 Oct 20.

11.

Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae.

Paulo JA, O'Connell JD, Gaun A, Gygi SP.

Mol Biol Cell. 2015 Nov 5;26(22):4063-74. doi: 10.1091/mbc.E15-07-0499. Epub 2015 Sep 23.

12.

Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system.

de Godoy LM, Olsen JV, de Souza GA, Li G, Mortensen P, Mann M.

Genome Biol. 2006;7(6):R50.

13.

Multiplexed quantification for data-independent acquisition.

Minogue CE, Hebert AS, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ.

Anal Chem. 2015 Mar 3;87(5):2570-5. doi: 10.1021/ac503593d. Epub 2015 Feb 11.

14.

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fröhlich F, Walther TC, Mann M.

Nature. 2008 Oct 30;455(7217):1251-4. doi: 10.1038/nature07341. Epub 2008 Sep 28.

PMID:
18820680
15.

Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.

Selevsek N, Chang CY, Gillet LC, Navarro P, Bernhardt OM, Reiter L, Cheng LY, Vitek O, Aebersold R.

Mol Cell Proteomics. 2015 Mar;14(3):739-49. doi: 10.1074/mcp.M113.035550. Epub 2015 Jan 5.

16.

High-resolution enabled 12-plex DiLeu isobaric tags for quantitative proteomics.

Frost DC, Greer T, Li L.

Anal Chem. 2015 Feb 3;87(3):1646-54. doi: 10.1021/ac503276z. Epub 2014 Dec 8.

17.

Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout Strains.

Isasa M, Rose CM, Elsasser S, Navarrete-Perea J, Paulo JA, Finley DJ, Gygi SP.

J Proteome Res. 2015 Dec 4;14(12):5306-17. doi: 10.1021/acs.jproteome.5b00802. Epub 2015 Nov 4.

18.

Global analysis of phosphoproteome regulation by the Ser/Thr phosphatase Ppt1 in Saccharomyces cerevisiae.

Schreiber TB, Mäusbacher N, Soroka J, Wandinger SK, Buchner J, Daub H.

J Proteome Res. 2012 Apr 6;11(4):2397-408. doi: 10.1021/pr201134p. Epub 2012 Mar 14.

PMID:
22369663
19.

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