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Items: 1 to 20 of 92

1.

Strain-level typing and identification of bacteria using mass spectrometry-based proteomics.

Karlsson R, Davidson M, Svensson-Stadler L, Karlsson A, Olesen K, Carlsohn E, Moore ER.

J Proteome Res. 2012 May 4;11(5):2710-20. doi: 10.1021/pr2010633. Epub 2012 Apr 11.

PMID:
22452665
2.

Mass spectrometry-based proteomics combined with bioinformatic tools for bacterial classification.

Dworzanski JP, Deshpande SV, Chen R, Jabbour RE, Snyder AP, Wick CH, Li L.

J Proteome Res. 2006 Jan;5(1):76-87.

PMID:
16396497
3.

Identification of Yersinia pestis and Escherichia coli strains by whole cell and outer membrane protein extracts with mass spectrometry-based proteomics.

Jabbour RE, Wade MM, Deshpande SV, Stanford MF, Wick CH, Zulich AW, Snyder AP.

J Proteome Res. 2010 Jul 2;9(7):3647-55. doi: 10.1021/pr100402y.

PMID:
20486690
4.
5.

Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L.

Anal Chem. 2004 Apr 15;76(8):2355-66.

PMID:
15080748
6.

Application of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the study of Helicobacter pylori.

Ilina EN, Borovskaya AD, Serebryakova MV, Chelysheva VV, Momynaliev KT, Maier T, Kostrzewa M, Govorun VM.

Rapid Commun Mass Spectrom. 2010 Feb;24(3):328-34. doi: 10.1002/rcm.4394.

PMID:
20049887
7.

Classification and identification of bacteria using mass spectrometry-based proteomics.

Dworzanski JP, Snyder AP.

Expert Rev Proteomics. 2005 Dec;2(6):863-78. Review.

PMID:
16307516
8.

Top-down identification of protein biomarkers in bacteria with unsequenced genomes.

Wynne C, Fenselau C, Demirev PA, Edwards N.

Anal Chem. 2009 Dec 1;81(23):9633-42. doi: 10.1021/ac9016677.

PMID:
19883058
9.

"Unknown genome" proteomics: a new NADP-dependent epimerase/dehydratase revealed by N-terminal sequencing, inverted PCR, and high resolution mass spectrometry.

Simeonova DD, Susnea I, Moise A, Schink B, Przybylski M.

Mol Cell Proteomics. 2009 Jan;8(1):122-31. doi: 10.1074/mcp.M800242-MCP200. Epub 2008 Aug 20.

10.

Identification of protein vaccine candidates from Helicobacter pylori using a preparative two-dimensional electrophoretic procedure and mass spectrometry.

Nilsson CL, Larsson T, Gustafsson E, Karlsson KA, Davidsson P.

Anal Chem. 2000 May 1;72(9):2148-53.

PMID:
10815978
11.

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF.

Nature. 2007 Mar 29;446(7135):537-41. Epub 2007 Mar 7.

PMID:
17344860
12.

Developing an integrated proteo-genomic approach for the characterisation of biomarkers for the identification of Bacillus anthracis.

Misra RV, Ahmod NZ, Parker R, Fang M, Shah H, Gharbia S.

J Microbiol Methods. 2012 Feb;88(2):237-47. doi: 10.1016/j.mimet.2011.12.001. Epub 2011 Dec 9.

PMID:
22178189
13.

Membrane protein digestion - comparison of LPI HexaLane with traditional techniques.

Sui P, Miliotis T, Davidson M, Karlsson R, Karlsson A.

Methods Mol Biol. 2011;753:129-42. doi: 10.1007/978-1-61779-148-2_9.

PMID:
21604120
14.

Subproteomes of soluble and structure-bound Helicobacter pylori proteins analyzed by two-dimensional gel electrophoresis and mass spectrometry.

Backert S, Kwok T, Schmid M, Selbach M, Moese S, Peek RM Jr, König W, Meyer TF, Jungblut PR.

Proteomics. 2005 Apr;5(5):1331-45.

PMID:
15717330
15.

Mass Spectrometry-based PhyloProteomics (MSPP): A novel microbial typing Method.

Zautner AE, Masanta WO, Weig M, Groß U, Bader O.

Sci Rep. 2015 Aug 25;5:13431. doi: 10.1038/srep13431.

16.

Proteomics in the study of the molecular taxonomy and epidemiology of bacterial pathogens.

Cash P.

Electrophoresis. 2009 Jun;30 Suppl 1:S133-41. doi: 10.1002/elps.200900059. Review.

PMID:
19517493
17.

A protein processing filter method for bacterial identification by mass spectrometry-based proteomics.

Jabbour RE, Deshpande SV, Stanford MF, Wick CH, Zulich AW, Snyder AP.

J Proteome Res. 2011 Feb 4;10(2):907-12. doi: 10.1021/pr101086a. Epub 2010 Dec 20.

PMID:
21126090
18.
19.

Molecular typing of Helicobacter pylori by virulence-gene based multiplex PCR and RT-PCR analysis.

Monstein HJ, Ellnebo-Svedlund K.

Helicobacter. 2002 Oct;7(5):287-96.

PMID:
12390208
20.

Improved mass spectrometric identification of gel-separated hydrophobic membrane proteins after sodium dodecyl sulfate removal by ion-pair extraction.

Zischka H, Gloeckner CJ, Klein C, Willmann S, Swiatek-de Lange M, Ueffing M.

Proteomics. 2004 Dec;4(12):3776-82.

PMID:
15540170

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