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Items: 1 to 20 of 141

1.

Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria.

Babujee L, Apodaca J, Balakrishnan V, Liss P, Kiley PJ, Charkowski AO, Glasner JD, Perna NT.

BMC Genomics. 2012 Mar 22;13:110. doi: 10.1186/1471-2164-13-110.

2.
3.

Massive production of butanediol during plant infection by phytopathogenic bacteria of the genera Dickeya and Pectobacterium.

Effantin G, Rivasseau C, Gromova M, Bligny R, Hugouvieux-Cotte-Pattat N.

Mol Microbiol. 2011 Nov;82(4):988-97. doi: 10.1111/j.1365-2958.2011.07881.x. Epub 2011 Oct 27.

4.
5.

The Response regulator HrpY of Dickeya dadantii 3937 regulates virulence genes not linked to the hrp cluster.

Yap MN, Yang CH, Charkowski AO.

Mol Plant Microbe Interact. 2008 Mar;21(3):304-14. doi: 10.1094/MPMI-21-3-0304.

6.

Inferring ancient metabolism using ancestral core metabolic models of enterobacteria.

Baumler DJ, Ma B, Reed JL, Perna NT.

BMC Syst Biol. 2013 Jun 11;7:46. doi: 10.1186/1752-0509-7-46.

7.

lpxC and yafS are the most suitable internal controls to normalize real time RT-qPCR expression in the phytopathogenic bacteria Dickeya dadantii.

Hommais F, Zghidi-Abouzid O, Oger-Desfeux C, Pineau-Chapelle E, Van Gijsegem F, Nasser W, Reverchon S.

PLoS One. 2011;6(5):e20269. doi: 10.1371/journal.pone.0020269. Epub 2011 May 26.

9.

Oxygen regulated gene expression in facultatively anaerobic bacteria.

Unden G, Becker S, Bongaerts J, Schirawski J, Six S.

Antonie Van Leeuwenhoek. 1994;66(1-3):3-22. Review.

PMID:
7747938
10.

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1.

Cruz-García C, Murray AE, Rodrigues JL, Gralnick JA, McCue LA, Romine MF, Löffler FE, Tiedje JM.

BMC Microbiol. 2011 Mar 30;11:64. doi: 10.1186/1471-2180-11-64.

11.

FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s).

Fink RC, Evans MR, Porwollik S, Vazquez-Torres A, Jones-Carson J, Troxell B, Libby SJ, McClelland M, Hassan HM.

J Bacteriol. 2007 Mar;189(6):2262-73. Epub 2007 Jan 12.

12.

Defining the plasticity of transcription factor binding sites by Deconstructing DNA consensus sequences: the PhoP-binding sites among gamma/enterobacteria.

Harari O, Park SY, Huang H, Groisman EA, Zwir I.

PLoS Comput Biol. 2010 Jul 22;6(7):e1000862. doi: 10.1371/journal.pcbi.1000862.

13.

Genome-scale co-expression network comparison across Escherichia coli and Salmonella enterica serovar Typhimurium reveals significant conservation at the regulon level of local regulators despite their dissimilar lifestyles.

Zarrineh P, Sánchez-Rodríguez A, Hosseinkhan N, Narimani Z, Marchal K, Masoudi-Nejad A.

PLoS One. 2014 Aug 7;9(8):e102871. doi: 10.1371/journal.pone.0102871. eCollection 2014.

14.

Deep sequencing-based analysis of the anaerobic stimulon in Neisseria gonorrhoeae.

Isabella VM, Clark VL.

BMC Genomics. 2011 Jan 20;12:51. doi: 10.1186/1471-2164-12-51.

15.

Role and regulation of the Flp/Tad pilus in the virulence of Pectobacterium atrosepticum SCRI1043 and Pectobacterium wasabiae SCC3193.

Nykyri J, Mattinen L, Niemi O, Adhikari S, Kõiv V, Somervuo P, Fang X, Auvinen P, Mäe A, Palva ET, Pirhonen M.

PLoS One. 2013 Sep 9;8(9):e73718. doi: 10.1371/journal.pone.0073718. eCollection 2013.

18.

Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium.

Evans MR, Fink RC, Vazquez-Torres A, Porwollik S, Jones-Carson J, McClelland M, Hassan HM.

BMC Microbiol. 2011 Mar 21;11:58. doi: 10.1186/1471-2180-11-58.

19.

SlyA regulates type III secretion system (T3SS) genes in parallel with the T3SS master regulator HrpL in Dickeya dadantii 3937.

Zou L, Zeng Q, Lin H, Gyaneshwar P, Chen G, Yang CH.

Appl Environ Microbiol. 2012 Apr;78(8):2888-95. doi: 10.1128/AEM.07021-11. Epub 2012 Jan 20.

20.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. doi: 10.1186/1471-2164-12-S1-S3.

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