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Items: 1 to 20 of 116

1.

Site-directed spin labeling of DNA reveals mismatch-induced nanometer distance changes between flanking nucleotides.

Wunnicke D, Ding P, Seela F, Steinhoff HJ.

J Phys Chem B. 2012 Apr 12;116(14):4118-23. doi: 10.1021/jp212421c. Epub 2012 Apr 3.

PMID:
22424032
3.

Site-directed spin-labeling of nucleic acids by click chemistry: detection of abasic sites in duplex DNA by EPR spectroscopy.

Jakobsen U, Shelke SA, Vogel S, Sigurdsson ST.

J Am Chem Soc. 2010 Aug 4;132(30):10424-8. doi: 10.1021/ja102797k.

PMID:
20617829
4.

Identification of single-base mismatches in duplex DNA by EPR spectroscopy.

Cekan P, Sigurdsson ST.

J Am Chem Soc. 2009 Dec 23;131(50):18054-6. doi: 10.1021/ja905623k.

PMID:
19928915
5.

DNA with Parallel Strand Orientation: A Nanometer Distance Study with Spin Labels in the Watson-Crick and the Reverse Watson-Crick Double Helix.

Wunnicke D, Ding P, Yang H, Seela F, Steinhoff HJ.

J Phys Chem B. 2015 Oct 29;119(43):13593-9. doi: 10.1021/acs.jpcb.5b02935. Epub 2015 Jul 10.

PMID:
26121221
6.

Site-specific insertion of nitroxide-spin labels into DNA probes by click chemistry for structural analyses by ELDOR spectroscopy.

Flaender M, Sicoli G, Fontecave T, Mathis G, Saint-Pierre C, Boulard Y, Gambarelli S, Gasparutto D.

Nucleic Acids Symp Ser (Oxf). 2008;(52):147-8. doi: 10.1093/nass/nrn075.

PMID:
18776296
7.

Spin labeling of oligonucleotides with the nitroxide TPA and use of PELDOR, a pulse EPR method, to measure intramolecular distances.

Schiemann O, Piton N, Plackmeyer J, Bode BE, Prisner TF, Engels JW.

Nat Protoc. 2007;2(4):904-23.

PMID:
17446891
8.

Enzymatic synthesis of multi spin-labeled DNA.

Obeid S, Yulikov M, Jeschke G, Marx A.

Nucleic Acids Symp Ser (Oxf). 2008;(52):373-4. doi: 10.1093/nass/nrn188.

PMID:
18776409
9.

Detection of internal and overall dynamics of a two-atom-tethered spin-labeled DNA.

Keyes RS, Bobst AM.

Biochemistry. 1995 Jul 18;34(28):9265-76.

PMID:
7619828
10.

Preparation and characterization of spin-labeled oligonucleotides for DNA hybridization.

Strobel OK, Kryak DD, Bobst EV, Bobst AM.

Bioconjug Chem. 1991 Mar-Apr;2(2):89-95.

PMID:
1651116
11.

A PELDOR-based nanometer distance ruler for oligonucleotides.

Schiemann O, Piton N, Mu Y, Stock G, Engels JW, Prisner TF.

J Am Chem Soc. 2004 May 12;126(18):5722-9.

PMID:
15125665
12.
13.

Nitroxide spin labeled RNA for long range distance measurements by EPR-PELDOR.

Frolow O, Endeward B, Schiemann O, Prisner TF, Engels JW.

Nucleic Acids Symp Ser (Oxf). 2008;(52):153-4. doi: 10.1093/nass/nrn078.

PMID:
18776299
14.

Rigid spin-labeled nucleoside C: a nonperturbing EPR probe of nucleic acid conformation.

Cekan P, Smith AL, Barhate N, Robinson BH, Sigurdsson ST.

Nucleic Acids Res. 2008 Oct;36(18):5946-54. doi: 10.1093/nar/gkn562. Epub 2008 Sep 19.

15.

Synthesis and relaxivities of oligonucleotides with TEMPO-labeled sugar moiety.

Okazaki M, Sato Y, Karasawa S, Koga N.

Nucleic Acids Symp Ser (Oxf). 2008;(52):375-6. doi: 10.1093/nass/nrn189.

PMID:
18776410
16.

Attachment of nitroxide spin labels to nucleic acids for EPR.

Romainczyk O, Elduque X, Engels JW.

Curr Protoc Nucleic Acid Chem. 2012 Jun;Chapter 7:Unit7.17. doi: 10.1002/0471142700.nc0717s49.

PMID:
22700338
17.

Modulation of pyrene fluorescence in DNA probes depends upon the nature of the conformationally restricted nucleotide.

Honcharenko D, Zhou C, Chattopadhyaya J.

J Org Chem. 2008 Apr 4;73(7):2829-42. doi: 10.1021/jo702747w. Epub 2008 Mar 11.

PMID:
18331060
18.

Structural changes of an abasic site in duplex DNA affect noncovalent binding of the spin label รง.

Shelke SA, Sigurdsson ST.

Nucleic Acids Res. 2012 Apr;40(8):3732-40. doi: 10.1093/nar/gkr1210. Epub 2011 Dec 30.

19.

High-density functionalization and cross-linking of DNA: "click" and "bis-click" cycloadditions performed on alkynylated oligonucleotides with fluorogenic anthracene azides.

Pujari SS, Ingale SA, Seela F.

Bioconjug Chem. 2014 Oct 15;25(10):1855-70. doi: 10.1021/bc5003532. Epub 2014 Sep 10.

PMID:
25154019
20.

Conformationally restricted isoindoline-derived spin labels in duplex DNA: distances and rotational flexibility by pulsed electron-electron double resonance spectroscopy.

Gophane DB, Endeward B, Prisner TF, Sigurdsson ST.

Chemistry. 2014 Nov 24;20(48):15913-9. doi: 10.1002/chem.201403726. Epub 2014 Oct 8.

PMID:
25296640

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