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Items: 1 to 20 of 112

1.

Widespread recurrent evolution of genomic features.

Maeso I, Roy SW, Irimia M.

Genome Biol Evol. 2012;4(4):486-500. doi: 10.1093/gbe/evs022. Epub 2012 Mar 13. Review.

2.

A paneukaryotic genomic analysis of the small GTPase RABL2 underscores the significance of recurrent gene loss in eukaryote evolution.

Eliáš M, Klimeš V, Derelle R, Petrželková R, Tachezy J.

Biol Direct. 2016 Feb 2;11(1):5. doi: 10.1186/s13062-016-0107-8.

3.

Evolution and classification of myosins, a paneukaryotic whole-genome approach.

Sebé-Pedrós A, Grau-Bové X, Richards TA, Ruiz-Trillo I.

Genome Biol Evol. 2014 Feb;6(2):290-305. doi: 10.1093/gbe/evu013.

4.

A genomic survey of HECT ubiquitin ligases in eukaryotes reveals independent expansions of the HECT system in several lineages.

Grau-Bové X, Sebé-Pedrós A, Ruiz-Trillo I.

Genome Biol Evol. 2013;5(5):833-47. doi: 10.1093/gbe/evt052.

5.

A broad phylogenetic survey unveils the diversity and evolution of telomeres in eukaryotes.

Fulnecková J, Sevcíková T, Fajkus J, Lukesová A, Lukes M, Vlcek C, Lang BF, Kim E, Eliás M, Sykorová E.

Genome Biol Evol. 2013;5(3):468-83. doi: 10.1093/gbe/evt019.

6.

Origin and evolution of spliceosomal introns.

Rogozin IB, Carmel L, Csuros M, Koonin EV.

Biol Direct. 2012 Apr 16;7:11. doi: 10.1186/1745-6150-7-11. Review.

7.

Function-selective domain architecture plasticity potentials in eukaryotic genome evolution.

Linkeviciute V, Rackham OJ, Gough J, Oates ME, Fang H.

Biochimie. 2015 Dec;119:269-77. doi: 10.1016/j.biochi.2015.05.003. Epub 2015 May 15.

8.

Correlated duplications and losses in the evolution of palmitoylation writer and eraser families.

Wittouck S, van Noort V.

BMC Evol Biol. 2017 Mar 20;17(1):83. doi: 10.1186/s12862-017-0932-0.

9.

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista.

Burki F, Kaplan M, Tikhonenkov DV, Zlatogursky V, Minh BQ, Radaykina LV, Smirnov A, Mylnikov AP, Keeling PJ.

Proc Biol Sci. 2016 Jan 27;283(1823). pii: 20152802. doi: 10.1098/rspb.2015.2802. Epub 2016 Jan 27.

10.

E value cutoff and eukaryotic genome content phylogenetics.

Rosenfeld JA, DeSalle R.

Mol Phylogenet Evol. 2012 May;63(2):342-50. doi: 10.1016/j.ympev.2012.01.003. Epub 2012 Jan 28.

PMID:
22306824
11.

Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles.

Baurain D, Brinkmann H, Petersen J, Rodríguez-Ezpeleta N, Stechmann A, Demoulin V, Roger AJ, Burger G, Lang BF, Philippe H.

Mol Biol Evol. 2010 Jul;27(7):1698-709. doi: 10.1093/molbev/msq059. Epub 2010 Mar 1.

PMID:
20194427
12.

The repatterning of eukaryotic genomes by random genetic drift.

Lynch M, Bobay LM, Catania F, Gout JF, Rho M.

Annu Rev Genomics Hum Genet. 2011;12:347-66. doi: 10.1146/annurev-genom-082410-101412. Review.

13.

Genome reduction as the dominant mode of evolution.

Wolf YI, Koonin EV.

Bioessays. 2013 Sep;35(9):829-37. doi: 10.1002/bies.201300037. Epub 2013 Jun 25.

14.

A new genomic evolutionary model for rearrangements, duplications, and losses that applies across eukaryotes and prokaryotes.

Lin Y, Moret BM.

J Comput Biol. 2011 Sep;18(9):1055-64. doi: 10.1089/cmb.2011.0098.

PMID:
21899415
15.

Origin and evolution of ubiquitin-conjugating enzymes from Guillardia theta nucleomorph to hominoid.

Ying M, Zhan Z, Wang W, Chen D.

Gene. 2009 Nov 15;447(2):72-85. doi: 10.1016/j.gene.2009.07.021. Epub 2009 Aug 5.

PMID:
19664694
16.

Weighted genome trees: refinements and applications.

Gophna U, Doolittle WF, Charlebois RL.

J Bacteriol. 2005 Feb;187(4):1305-16.

17.

Genome sequencing and population genomics in non-model organisms.

Ellegren H.

Trends Ecol Evol. 2014 Jan;29(1):51-63. doi: 10.1016/j.tree.2013.09.008. Epub 2013 Oct 17. Review.

PMID:
24139972
18.
19.

The origins of genome complexity.

Lynch M, Conery JS.

Science. 2003 Nov 21;302(5649):1401-4.

20.

Internal and external paralogy in the evolution of tropomyosin genes in metazoans.

Irimia M, Maeso I, Gunning PW, Garcia-Fernàndez J, Roy SW.

Mol Biol Evol. 2010 Jul;27(7):1504-17. doi: 10.1093/molbev/msq018. Epub 2010 Feb 10.

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