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Items: 1 to 20 of 88

1.

Response to Klyuyev and Vassylyev: on the mechanism of tagetitoxin inhibition of transcription.

Svetlov V, Artsimovitch I, Nudler E.

Transcription. 2012 Mar-Apr;3(2):51-5. doi: 10.4161/trns.19749. Epub 2012 Mar 1.

2.

Tagetitoxin inhibits RNA polymerase through trapping of the trigger loop.

Artsimovitch I, Svetlov V, Nemetski SM, Epshtein V, Cardozo T, Nudler E.

J Biol Chem. 2011 Nov 18;286(46):40395-400. doi: 10.1074/jbc.M111.300889. Epub 2011 Oct 5.

3.

The binding site and mechanism of the RNA polymerase inhibitor tagetitoxin: an issue open to debate.

Klyuyev S, Vassylyev DG.

Transcription. 2012 Mar-Apr;3(2):46-50. doi: 10.4161/trns.19468. Epub 2012 Mar 1.

4.

Structural basis for transcription inhibition by tagetitoxin.

Vassylyev DG, Svetlov V, Vassylyeva MN, Perederina A, Igarashi N, Matsugaki N, Wakatsuki S, Artsimovitch I.

Nat Struct Mol Biol. 2005 Dec;12(12):1086-93. Epub 2005 Nov 6.

5.

Tagetitoxin inhibits transcription by stabilizing pre-translocated state of the elongation complex.

Yuzenkova Y, Roghanian M, Bochkareva A, Zenkin N.

Nucleic Acids Res. 2013 Nov;41(20):9257-65. doi: 10.1093/nar/gkt708. Epub 2013 Aug 9.

6.

Characterization of the RNA polymerases of Crithidia fasciculata.

Köck J, Cornelissen AW.

Mol Microbiol. 1991 Apr;5(4):835-42.

PMID:
1857206
7.

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein.

Tagami S, Sekine S, Kumarevel T, Hino N, Murayama Y, Kamegamori S, Yamamoto M, Sakamoto K, Yokoyama S.

Nature. 2010 Dec 16;468(7326):978-82. doi: 10.1038/nature09573. Epub 2010 Dec 1.

PMID:
21124318
8.

Active site opening and closure control translocation of multisubunit RNA polymerase.

Malinen AM, Turtola M, Parthiban M, Vainonen L, Johnson MS, Belogurov GA.

Nucleic Acids Res. 2012 Aug;40(15):7442-51. doi: 10.1093/nar/gks383. Epub 2012 May 8.

9.

Crystallization and preliminary X-ray crystallographic analyses of Thermus thermophilus backtracked RNA polymerase.

Murayama Y, Sekine S, Yokoyama S.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Feb 1;69(Pt 2):174-7. doi: 10.1107/S1744309113000055. Epub 2013 Jan 31.

10.

Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation.

Vrentas CE, Gaal T, Berkmen MB, Rutherford ST, Haugen SP, Vassylyev DG, Ross W, Gourse RL.

J Mol Biol. 2008 Mar 21;377(2):551-64. doi: 10.1016/j.jmb.2008.01.042. Epub 2008 Jan 26. Erratum in: J Mol Biol. 2008 Jun 20;379(5):1130.

11.

Crystallization and preliminary X-ray crystallographic analysis of Thermus thermophilus transcription elongation complex bound to Gfh1.

Tagami S, Sekine S, Kumarevel T, Yamamoto M, Yokoyama S.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jan 1;66(Pt 1):64-8. doi: 10.1107/S1744309109049215. Epub 2009 Dec 25.

13.

pH-dependent conformational switch activates the inhibitor of transcription elongation.

Laptenko O, Kim SS, Lee J, Starodubtseva M, Cava F, Berenguer J, Kong XP, Borukhov S.

EMBO J. 2006 May 17;25(10):2131-41. Epub 2006 Apr 20.

14.

Structural biology of bacterial RNA polymerase.

Murakami KS.

Biomolecules. 2015 May 11;5(2):848-64. doi: 10.3390/biom5020848. Review.

15.

Mechanistic aspects of tagetitoxin inhibition of RNA polymerase from Escherichia coli.

Mathews DE, Durbin RD.

Biochemistry. 1994 Oct 4;33(39):11987-92.

PMID:
7918417
16.
17.

Structural basis of transcription inhibition by antibiotic streptolydigin.

Temiakov D, Zenkin N, Vassylyeva MN, Perederina A, Tahirov TH, Kashkina E, Savkina M, Zorov S, Nikiforov V, Igarashi N, Matsugaki N, Wakatsuki S, Severinov K, Vassylyev DG.

Mol Cell. 2005 Sep 2;19(5):655-66.

18.

TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle.

Schulz S, Gietl A, Smollett K, Tinnefeld P, Werner F, Grohmann D.

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):E1816-25. doi: 10.1073/pnas.1515817113. Epub 2016 Mar 15. Erratum in: Proc Natl Acad Sci U S A. 2016 May 17;113(20):E2871.

19.

An allosteric mechanism of Rho-dependent transcription termination.

Epshtein V, Dutta D, Wade J, Nudler E.

Nature. 2010 Jan 14;463(7278):245-9. doi: 10.1038/nature08669. Erratum in: Nature. 2010 Aug 19;466(7309):1006.

20.

Tagetitoxin: a new inhibitor of eukaryotic transcription by RNA polymerase III.

Steinberg TH, Mathews DE, Durbin RD, Burgess RR.

J Biol Chem. 1990 Jan 5;265(1):499-505.

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