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Items: 1 to 20 of 307

1.

Markov dynamics as a zooming lens for multiscale community detection: non clique-like communities and the field-of-view limit.

Schaub MT, Delvenne JC, Yaliraki SN, Barahona M.

PLoS One. 2012;7(2):e32210. doi: 10.1371/journal.pone.0032210.

2.

Encoding dynamics for multiscale community detection: Markov time sweeping for the map equation.

Schaub MT, Lambiotte R, Barahona M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 2):026112.

PMID:
23005830
3.

Finding local communities in protein networks.

Voevodski K, Teng SH, Xia Y.

BMC Bioinformatics. 2009 Sep 18;10:297. doi: 10.1186/1471-2105-10-297.

4.

Identifying protein complexes from interaction networks based on clique percolation and distance restriction.

Wang J, Liu B, Li M, Pan Y.

BMC Genomics. 2010 Nov 2;11 Suppl 2:S10. doi: 10.1186/1471-2164-11-S2-S10.

5.

Stability of graph communities across time scales.

Delvenne JC, Yaliraki SN, Barahona M.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12755-60. doi: 10.1073/pnas.0903215107.

6.

Modeling complex metabolic reactions, ecological systems, and financial and legal networks with MIANN models based on Markov-Wiener node descriptors.

Duardo-Sánchez A, Munteanu CR, Riera-Fernández P, López-Díaz A, Pazos A, González-Díaz H.

J Chem Inf Model. 2014 Jan 27;54(1):16-29. doi: 10.1021/ci400280n.

PMID:
24320872
7.

Exploring community structure in biological networks with random graphs.

Sah P, Singh LO, Clauset A, Bansal S.

BMC Bioinformatics. 2014 Jun 25;15:220. doi: 10.1186/1471-2105-15-220.

8.

Finding statistically significant communities in networks.

Lancichinetti A, Radicchi F, Ramasco JJ, Fortunato S.

PLoS One. 2011 Apr 29;6(4):e18961. doi: 10.1371/journal.pone.0018961.

9.

Towards online multiresolution community detection in large-scale networks.

Huang J, Sun H, Liu Y, Song Q, Weninger T.

PLoS One. 2011;6(8):e23829. doi: 10.1371/journal.pone.0023829.

10.

Protein flexibility predictions using graph theory.

Jacobs DJ, Rader AJ, Kuhn LA, Thorpe MF.

Proteins. 2001 Aug 1;44(2):150-65.

PMID:
11391777
11.

Markov random field-based statistical character structure modeling for handwritten Chinese character recognition.

Zeng J, Liu ZQ.

IEEE Trans Pattern Anal Mach Intell. 2008 May;30(5):767-80. doi: 10.1109/TPAMI.2007.70734.

PMID:
18369248
12.

Fitting a geometric graph to a protein-protein interaction network.

Higham DJ, Rasajski M, Przulj N.

Bioinformatics. 2008 Apr 15;24(8):1093-9. doi: 10.1093/bioinformatics/btn079.

13.

Anti-triangle centrality-based community detection in complex networks.

Jia S, Gao L, Gao Y, Wang H.

IET Syst Biol. 2014 Jun;8(3):116-25. doi: 10.1049/iet-syb.2013.0039.

PMID:
25014378
14.

Link community detection using generative model and nonnegative matrix factorization.

He D, Jin D, Baquero C, Liu D.

PLoS One. 2014 Jan 28;9(1):e86899. doi: 10.1371/journal.pone.0086899.

15.

Assessment and statistical modeling of the relationship between remotely sensed aerosol optical depth and PM2.5 in the eastern United States.

Paciorek CJ, Liu Y; HEI Health Review Committee..

Res Rep Health Eff Inst. 2012 May;(167):5-83; discussion 85-91.

PMID:
22838153
16.

The function of communities in protein interaction networks at multiple scales.

Lewis AC, Jones NS, Porter MA, Deane CM.

BMC Syst Biol. 2010 Jul 22;4:100. doi: 10.1186/1752-0509-4-100.

17.

Heuristics for chemical compound matching.

Hattori M, Okuno Y, Goto S, Kanehisa M.

Genome Inform. 2003;14:144-53.

PMID:
15706529
18.

Dynamic social community detection and its applications.

Nguyen NP, Dinh TN, Shen Y, Thai MT.

PLoS One. 2014 Apr 10;9(4):e91431. doi: 10.1371/journal.pone.0091431.

19.

A Shadowing Problem in the Detection of Overlapping Communities: Lifting the Resolution Limit through a Cascading Procedure.

Young JG, Allard A, Hébert-Dufresne L, Dubé LJ.

PLoS One. 2015 Oct 13;10(10):e0140133. doi: 10.1371/journal.pone.0140133.

20.

Fast model-based protein homology detection without alignment.

Hochreiter S, Heusel M, Obermayer K.

Bioinformatics. 2007 Jul 15;23(14):1728-36.

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