Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 171

1.

Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1.

Wang X, Juan L, Lv J, Wang K, Sanford JR, Liu Y.

BMC Genomics. 2011 Dec 23;12 Suppl 5:S8. doi: 10.1186/1471-2164-12-S5-S8. Epub 2011 Dec 23.

3.

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.

Sanford JR, Wang X, Mort M, Vanduyn N, Cooper DN, Mooney SD, Edenberg HJ, Liu Y.

Genome Res. 2009 Mar;19(3):381-94. doi: 10.1101/gr.082503.108. Epub 2008 Dec 30.

4.

Leveraging cross-link modification events in CLIP-seq for motif discovery.

Bahrami-Samani E, Penalva LO, Smith AD, Uren PJ.

Nucleic Acids Res. 2015 Jan;43(1):95-103. doi: 10.1093/nar/gku1288. Epub 2014 Dec 10.

5.

RNA Bind-n-Seq: Measuring the Binding Affinity Landscape of RNA-Binding Proteins.

Lambert NJ, Robertson AD, Burge CB.

Methods Enzymol. 2015;558:465-93. doi: 10.1016/bs.mie.2015.02.007. Epub 2015 May 12.

PMID:
26068750
6.

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions.

Hiller M, Pudimat R, Busch A, Backofen R.

Nucleic Acids Res. 2006;34(17):e117. Epub 2006 Sep 20.

7.

Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing.

Pandit S, Zhou Y, Shiue L, Coutinho-Mansfield G, Li H, Qiu J, Huang J, Yeo GW, Ares M Jr, Fu XD.

Mol Cell. 2013 Apr 25;50(2):223-35. doi: 10.1016/j.molcel.2013.03.001. Epub 2013 Apr 4.

8.

CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data.

Fukunaga T, Ozaki H, Terai G, Asai K, Iwasaki W, Kiryu H.

Genome Biol. 2014 Jan 21;15(1):R16. doi: 10.1186/gb-2014-15-1-r16.

9.

CLIPdb: a CLIP-seq database for protein-RNA interactions.

Yang YC, Di C, Hu B, Zhou M, Liu Y, Song N, Li Y, Umetsu J, Lu ZJ.

BMC Genomics. 2015 Feb 5;16:51. doi: 10.1186/s12864-015-1273-2.

10.

The human splicing factor ASF/SF2 can specifically recognize pre-mRNA 5' splice sites.

Zuo P, Manley JL.

Proc Natl Acad Sci U S A. 1994 Apr 12;91(8):3363-7.

11.

RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.

Kazan H, Ray D, Chan ET, Hughes TR, Morris Q.

PLoS Comput Biol. 2010 Jul 1;6:e1000832. doi: 10.1371/journal.pcbi.1000832.

12.

Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.

Comoglio F, Sievers C, Paro R.

BMC Bioinformatics. 2015 Feb 1;16:32. doi: 10.1186/s12859-015-0470-y.

13.

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J.

J Vis Exp. 2011 Apr 30;(50). pii: 2638. doi: 10.3791/2638.

14.

Exonic splicing enhancer motif recognized by human SC35 under splicing conditions.

Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR.

Mol Cell Biol. 2000 Feb;20(3):1063-71.

15.

The SRSF1 linker induces semi-conservative ESE binding by cooperating with the RRMs.

Cho S, Hoang A, Chakrabarti S, Huynh N, Huang DB, Ghosh G.

Nucleic Acids Res. 2011 Nov;39(21):9413-21. doi: 10.1093/nar/gkr663. Epub 2011 Aug 18.

16.

Prediction of clustered RNA-binding protein motif sites in the mammalian genome.

Zhang C, Lee KY, Swanson MS, Darnell RB.

Nucleic Acids Res. 2013 Aug;41(14):6793-807. doi: 10.1093/nar/gkt421. Epub 2013 May 18.

17.

De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function.

Han A, Stoilov P, Linares AJ, Zhou Y, Fu XD, Black DL.

PLoS Comput Biol. 2014 Jan 30;10(1):e1003442. doi: 10.1371/journal.pcbi.1003442. eCollection 2014 Jan.

18.

Ubiquitination regulates expression of the serine/arginine-rich splicing factor 1 (SRSF1) in normal and systemic lupus erythematosus (SLE) T cells.

Moulton VR, Gillooly AR, Tsokos GC.

J Biol Chem. 2014 Feb 14;289(7):4126-34. doi: 10.1074/jbc.M113.518662. Epub 2013 Dec 24.

19.

Emerging functions of SRSF1, splicing factor and oncoprotein, in RNA metabolism and cancer.

Das S, Krainer AR.

Mol Cancer Res. 2014 Sep;12(9):1195-204. doi: 10.1158/1541-7786.MCR-14-0131. Epub 2014 May 7. Review.

20.

SRSF1 RNA Recognition Motifs Are Strong Inhibitors of HIV-1 Replication.

Paz S, Lu ML, Takata H, Trautmann L, Caputi M.

J Virol. 2015 Jun;89(12):6275-86. doi: 10.1128/JVI.00693-15. Epub 2015 Apr 8.

Supplemental Content

Support Center