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Items: 1 to 20 of 97

1.

Comparison of pathway analysis approaches using lung cancer GWAS data sets.

Fehringer G, Liu G, Briollais L, Brennan P, Amos CI, Spitz MR, Bickeböller H, Wichmann HE, Risch A, Hung RJ.

PLoS One. 2012;7(2):e31816. doi: 10.1371/journal.pone.0031816. Epub 2012 Feb 21.

2.

SNP-based pathway enrichment analysis for genome-wide association studies.

Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X.

BMC Bioinformatics. 2011 Apr 15;12:99. doi: 10.1186/1471-2105-12-99.

3.

Pathway-based analysis using genome-wide association data from a Korean non-small cell lung cancer study.

Lee D, Lee GK, Yoon KA, Lee JS.

PLoS One. 2013 Jun 6;8(6):e65396. doi: 10.1371/journal.pone.0065396. Print 2013.

4.

META-GSA: Combining Findings from Gene-Set Analyses across Several Genome-Wide Association Studies.

Rosenberger A, Friedrichs S, Amos CI, Brennan P, Fehringer G, Heinrich J, Hung RJ, Muley T, Müller-Nurasyid M, Risch A, Bickeböller H.

PLoS One. 2015 Oct 26;10(10):e0140179. doi: 10.1371/journal.pone.0140179. eCollection 2015.

5.

Pathway-based analysis of primary biliary cirrhosis genome-wide association studies.

Kar SP, Seldin MF, Chen W, Lu E, Hirschfield GM, Invernizzi P, Heathcote J, Cusi D; Italian PBC Genetics Study Group, Gershwin ME, Siminovitch KA, Amos CI.

Genes Immun. 2013 Apr;14(3):179-86. doi: 10.1038/gene.2013.1. Epub 2013 Feb 7.

6.

Pathway analysis of breast cancer genome-wide association study highlights three pathways and one canonical signaling cascade.

Menashe I, Maeder D, Garcia-Closas M, Figueroa JD, Bhattacharjee S, Rotunno M, Kraft P, Hunter DJ, Chanock SJ, Rosenberg PS, Chatterjee N.

Cancer Res. 2010 Jun 1;70(11):4453-9. doi: 10.1158/0008-5472.CAN-09-4502. Epub 2010 May 11.

7.

Identifying SNP targeted pathways in partial epilepsies with genome-wide association study data.

Bakir-Gungor B, Baykan B, Ugur İseri S, Tuncer FN, Sezerman OU.

Epilepsy Res. 2013 Jul;105(1-2):92-102. doi: 10.1016/j.eplepsyres.2013.02.008. Epub 2013 Mar 14.

PMID:
23498093
8.

Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer.

Jia P, Liu Y, Zhao Z.

BMC Syst Biol. 2012;6 Suppl 3:S13. doi: 10.1186/1752-0509-6-S3-S13. Epub 2012 Dec 17.

9.

Uncovering networks from genome-wide association studies via circular genomic permutation.

Cabrera CP, Navarro P, Huffman JE, Wright AF, Hayward C, Campbell H, Wilson JF, Rudan I, Hastie ND, Vitart V, Haley CS.

G3 (Bethesda). 2012 Sep;2(9):1067-75. doi: 10.1534/g3.112.002618. Epub 2012 Sep 1.

10.

Large-scale pathway-based analysis of bladder cancer genome-wide association data from five studies of European background.

Menashe I, Figueroa JD, Garcia-Closas M, Chatterjee N, Malats N, Picornell A, Maeder D, Yang Q, Prokunina-Olsson L, Wang Z, Real FX, Jacobs KB, Baris D, Thun M, Albanes D, Purdue MP, Kogevinas M, Hutchinson A, Fu YP, Tang W, Burdette L, Tardón A, Serra C, Carrato A, García-Closas R, Lloreta J, Johnson A, Schwenn M, Schned A, Andriole G Jr, Black A, Jacobs EJ, Diver RW, Gapstur SM, Weinstein SJ, Virtamo J, Caporaso NE, Landi MT, Fraumeni JF Jr, Chanock SJ, Silverman DT, Rothman N.

PLoS One. 2012;7(1):e29396. doi: 10.1371/journal.pone.0029396. Epub 2012 Jan 4.

11.

RS-SNP: a random-set method for genome-wide association studies.

D'Addabbo A, Palmieri O, Latiano A, Annese V, Mukherjee S, Ancona N.

BMC Genomics. 2011 Mar 30;12:166. doi: 10.1186/1471-2164-12-166.

12.

Gene set analysis of GWAS data for human longevity highlights the relevance of the insulin/IGF-1 signaling and telomere maintenance pathways.

Deelen J, Uh HW, Monajemi R, van Heemst D, Thijssen PE, Böhringer S, van den Akker EB, de Craen AJ, Rivadeneira F, Uitterlinden AG, Westendorp RG, Goeman JJ, Slagboom PE, Houwing-Duistermaat JJ, Beekman M.

Age (Dordr). 2013 Feb;35(1):235-49. doi: 10.1007/s11357-011-9340-3. Epub 2011 Nov 24.

13.

Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.

Li WD, Jiao H, Wang K, Yang F, Grant SF, Hakonarson H, Ahima R, Arlen Price R.

Sci Rep. 2015 Aug 24;5:13422. doi: 10.1038/srep13422.

14.

ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations.

Chimusa ER, Mbiyavanga M, Mazandu GK, Mulder NJ.

Bioinformatics. 2016 Feb 15;32(4):549-56. doi: 10.1093/bioinformatics/btv619. Epub 2015 Oct 27.

PMID:
26508762
15.

Pathway analysis for genome-wide association study of lung cancer in Han Chinese population.

Zhang R, Zhao Y, Chu M, Wu C, Jin G, Dai J, Wang C, Hu L, Gou J, Qian C, Bai J, Wu T, Hu Z, Lin D, Shen H, Chen F.

PLoS One. 2013;8(3):e57763. doi: 10.1371/journal.pone.0057763. Epub 2013 Mar 1.

16.

Effect of occupational exposures on lung cancer susceptibility: a study of gene-environment interaction analysis.

Malhotra J, Sartori S, Brennan P, Zaridze D, Szeszenia-Dabrowska N, Świątkowska B, Rudnai P, Lissowska J, Fabianova E, Mates D, Bencko V, Gaborieau V, Stücker I, Foretova L, Janout V, Boffetta P.

Cancer Epidemiol Biomarkers Prev. 2015 Mar;24(3):570-9. doi: 10.1158/1055-9965.EPI-14-1143-T. Epub 2015 Jan 12.

17.

Pathway analysis for a genome-wide association study of pneumoconiosis.

Wang T, Yang J, Ji X, Chu M, Zhang R, Dai J, Jin G, Hu Z, Shen H, Ni C.

Toxicol Lett. 2015 Jan 5;232(1):284-92. doi: 10.1016/j.toxlet.2014.10.028. Epub 2014 Nov 4.

PMID:
25445010
18.

GSEA-SNP: applying gene set enrichment analysis to SNP data from genome-wide association studies.

Holden M, Deng S, Wojnowski L, Kulle B.

Bioinformatics. 2008 Dec 1;24(23):2784-5. doi: 10.1093/bioinformatics/btn516. Epub 2008 Oct 14.

PMID:
18854360
19.

Pathway analysis of smoking quantity in multiple GWAS identifies cholinergic and sensory pathways.

Harari O, Wang JC, Bucholz K, Edenberg HJ, Heath A, Martin NG, Pergadia ML, Montgomery G, Schrage A, Bierut LJ, Madden PF, Goate AM.

PLoS One. 2012;7(12):e50913. doi: 10.1371/journal.pone.0050913. Epub 2012 Dec 5. Erratum in: PLoS One. 2013;8(8). doi:10.1371/annotation/21033005-e120-4364-8024-c6534b4108f6.

20.

Integrating pathway analysis and genetics of gene expression for genome-wide association study of basal cell carcinoma.

Zhang M, Liang L, Morar N, Dixon AL, Lathrop GM, Ding J, Moffatt MF, Cookson WO, Kraft P, Qureshi AA, Han J.

Hum Genet. 2012 Apr;131(4):615-23. doi: 10.1007/S00439-011-11047-8. Epub 2011 Oct 18.

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