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Items: 1 to 20 of 87

1.

EGID: an ensemble algorithm for improved genomic island detection in genomic sequences.

Che D, Hasan MS, Wang H, Fazekas J, Huang J, Liu Q.

Bioinformation. 2011;7(6):311-4. Epub 2011 Nov 20.

2.

GIST: Genomic island suite of tools for predicting genomic islands in genomic sequences.

Hasan MS, Liu Q, Wang H, Fazekas J, Chen B, Che D.

Bioinformation. 2012;8(4):203-5. doi: 10.6026/97320630008203. Epub 2012 Feb 28.

3.

GIV: A Tool for Genomic Islands Visualization.

Che D, Wang H.

Bioinformation. 2013 Oct 16;9(17):879-82. doi: 10.6026/97320630009879. eCollection 2013.

4.

Classification of genomic islands using decision trees and their ensemble algorithms.

Che D, Hockenbury C, Marmelstein R, Rasheed K.

BMC Genomics. 2010 Nov 2;11 Suppl 2:S1. doi: 10.1186/1471-2164-11-S2-S1.

5.

MTGIpick allows robust identification of genomic islands from a single genome.

Dai Q, Bao C, Hai Y, Ma S, Zhou T, Wang C, Wang Y, Huo W, Liu X, Yao Y, Xuan Z, Chen M, Zhang MQ.

Brief Bioinform. 2016 Dec 26. pii: bbw118. doi: 10.1093/bib/bbw118. [Epub ahead of print]

PMID:
28025178
6.

A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm.

de Brito DM, Maracaja-Coutinho V, de Farias ST, Batista LV, do RĂªgo TG.

PLoS One. 2016 Jan 5;11(1):e0146352. doi: 10.1371/journal.pone.0146352. eCollection 2016.

7.

IslandViewer update: Improved genomic island discovery and visualization.

Dhillon BK, Chiu TA, Laird MR, Langille MG, Brinkman FS.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W129-32. doi: 10.1093/nar/gkt394. Epub 2013 May 15.

8.

A Computational Framework for Tracing the Origins of Genomic Islands in Prokaryotes.

Wan P, Che D.

Int Sch Res Notices. 2014 Oct 28;2014:732857. doi: 10.1155/2014/732857. eCollection 2014.

9.

Minimalist ensemble algorithms for genome-wide protein localization prediction.

Lin JR, Mondal AM, Liu R, Hu J.

BMC Bioinformatics. 2012 Jul 3;13:157. doi: 10.1186/1471-2105-13-157.

10.

Evaluation of genomic island predictors using a comparative genomics approach.

Langille MG, Hsiao WW, Brinkman FS.

BMC Bioinformatics. 2008 Aug 5;9:329. doi: 10.1186/1471-2105-9-329.

11.

Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties.

Wei W, Gao F, Du MZ, Hua HL, Wang J, Guo FB.

Brief Bioinform. 2017 May 1;18(3):357-366. doi: 10.1093/bib/bbw019.

12.

GI-POP: a combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects.

Lee CC, Chen YP, Yao TJ, Ma CY, Lo WC, Lyu PC, Tang CY.

Gene. 2013 Apr 10;518(1):114-23. doi: 10.1016/j.gene.2012.11.063. Epub 2013 Jan 12.

PMID:
23318308
13.

GI-SVM: A sensitive method for predicting genomic islands based on unannotated sequence of a single genome.

Lu B, Leong HW.

J Bioinform Comput Biol. 2016 Feb;14(1):1640003. doi: 10.1142/S0219720016400035.

PMID:
26907990
14.

PIPS: pathogenicity island prediction software.

Soares SC, Abreu VA, Ramos RT, Cerdeira L, Silva A, Baumbach J, Trost E, Tauch A, Hirata R Jr, Mattos-Guaraldi AL, Miyoshi A, Azevedo V.

PLoS One. 2012;7(2):e30848. doi: 10.1371/journal.pone.0030848. Epub 2012 Feb 15.

15.

Burkholderia pseudomallei genome plasticity associated with genomic island variation.

Tumapa S, Holden MT, Vesaratchavest M, Wuthiekanun V, Limmathurotsakul D, Chierakul W, Feil EJ, Currie BJ, Day NP, Nierman WC, Peacock SJ.

BMC Genomics. 2008 Apr 25;9:190. doi: 10.1186/1471-2164-9-190.

16.

MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islands.

Ou HY, He X, Harrison EM, Kulasekara BR, Thani AB, Kadioglu A, Lory S, Hinton JC, Barer MR, Deng Z, Rajakumar K.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W97-W104. Epub 2007 May 30.

17.

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.

Waack S, Keller O, Asper R, Brodag T, Damm C, Fricke WF, Surovcik K, Meinicke P, Merkl R.

BMC Bioinformatics. 2006 Mar 16;7:142.

18.

Computational methods for predicting genomic islands in microbial genomes.

Lu B, Leong HW.

Comput Struct Biotechnol J. 2016 May 7;14:200-6. doi: 10.1016/j.csbj.2016.05.001. eCollection 2016. Review.

19.

A computational approach for identifying pathogenicity islands in prokaryotic genomes.

Yoon SH, Hur CG, Kang HY, Kim YH, Oh TK, Kim JF.

BMC Bioinformatics. 2005 Jul 21;6:184.

20.

EnsemPro: an ensemble approach to predicting transcription start sites in human genomic DNA sequences.

Won HH, Kim MJ, Kim S, Kim JW.

Genomics. 2008 Mar;91(3):259-66. doi: 10.1016/j.ygeno.2007.11.001.

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