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Items: 1 to 20 of 170

1.

HIPPIE: Integrating protein interaction networks with experiment based quality scores.

Schaefer MH, Fontaine JF, Vinayagam A, Porras P, Wanker EE, Andrade-Navarro MA.

PLoS One. 2012;7(2):e31826. doi: 10.1371/journal.pone.0031826. Epub 2012 Feb 14.

2.

HIPPIE v2.0: enhancing meaningfulness and reliability of protein-protein interaction networks.

Alanis-Lobato G, Andrade-Navarro MA, Schaefer MH.

Nucleic Acids Res. 2017 Jan 4;45(D1):D408-D414. doi: 10.1093/nar/gkw985. Epub 2016 Oct 24.

3.
4.

Integration of multiple biological features yields high confidence human protein interactome.

Karagoz K, Sevimoglu T, Arga KY.

J Theor Biol. 2016 Aug 21;403:85-96. doi: 10.1016/j.jtbi.2016.05.020. Epub 2016 May 16.

PMID:
27196966
5.

HAPPI: an online database of comprehensive human annotated and predicted protein interactions.

Chen JY, Mamidipalli S, Huan T.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S16. doi: 10.1186/1471-2164-10-S1-S16.

6.

The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer.

Suzuki H, Saito R, Kanamori M, Kai C, Schönbach C, Nagashima T, Hosaka J, Hayashizaki Y.

Genome Res. 2003 Jun;13(6B):1534-41.

7.

Inferring high-confidence human protein-protein interactions.

Yu X, Wallqvist A, Reifman J.

BMC Bioinformatics. 2012 May 4;13:79. doi: 10.1186/1471-2105-13-79.

8.

Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.

Zhou H, Wong L.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S20. doi: 10.1186/1471-2164-12-S3-S20. Epub 2011 Nov 30.

9.

MPact: the MIPS protein interaction resource on yeast.

Güldener U, Münsterkötter M, Oesterheld M, Pagel P, Ruepp A, Mewes HW, Stümpflen V.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D436-41.

10.

IIIDB: a database for isoform-isoform interactions and isoform network modules.

Tseng YT, Li W, Chen CH, Zhang S, Chen JJ, Zhou X, Liu CC.

BMC Genomics. 2015;16 Suppl 2:S10. doi: 10.1186/1471-2164-16-S2-S10. Epub 2015 Jan 21.

11.

UniHI: an entry gate to the human protein interactome.

Chaurasia G, Iqbal Y, Hänig C, Herzel H, Wanker EE, Futschik ME.

Nucleic Acids Res. 2007 Jan;35(Database issue):D590-4. Epub 2006 Dec 7.

12.

Predicting protein-protein interactions based only on sequences information.

Shen J, Zhang J, Luo X, Zhu W, Yu K, Chen K, Li Y, Jiang H.

Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4337-41. Epub 2007 Mar 5.

13.

PRINCESS, a protein interaction confidence evaluation system with multiple data sources.

Li D, Liu W, Liu Z, Wang J, Liu Q, Zhu Y, He F.

Mol Cell Proteomics. 2008 Jun;7(6):1043-52. doi: 10.1074/mcp.M700287-MCP200. Epub 2008 Jan 29.

14.

A mouse protein interactome through combined literature mining with multiple sources of interaction evidence.

Li X, Cai H, Xu J, Ying S, Zhang Y.

Amino Acids. 2010 Apr;38(4):1237-52. doi: 10.1007/s00726-009-0335-7. Epub 2009 Aug 8.

PMID:
19669079
15.

CABIN: collective analysis of biological interaction networks.

Singhal M, Domico K.

Comput Biol Chem. 2007 Jun;31(3):222-5. Epub 2007 Mar 30.

PMID:
17500038
16.

IntScore: a web tool for confidence scoring of biological interactions.

Kamburov A, Stelzl U, Herwig R.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W140-6. doi: 10.1093/nar/gks492. Epub 2012 May 30.

17.

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

18.

PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology.

Gioutlakis A, Klapa MI, Moschonas NK.

PLoS One. 2017 Oct 12;12(10):e0186039. doi: 10.1371/journal.pone.0186039. eCollection 2017.

19.

Triangle network motifs predict complexes by complementing high-error interactomes with structural information.

Andreopoulos B, Winter C, Labudde D, Schroeder M.

BMC Bioinformatics. 2009 Jun 27;10:196. doi: 10.1186/1471-2105-10-196.

20.

GIBA: a clustering tool for detecting protein complexes.

Moschopoulos CN, Pavlopoulos GA, Schneider R, Likothanassis SD, Kossida S.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S11. doi: 10.1186/1471-2105-10-S6-S11.

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