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Items: 1 to 20 of 226

1.

Online tools for polyphasic analysis of Mycobacterium tuberculosis complex genotyping data: now and next.

Weniger T, Krawczyk J, Supply P, Harmsen D, Niemann S.

Infect Genet Evol. 2012 Jun;12(4):748-54. doi: 10.1016/j.meegid.2012.01.021. Epub 2012 Feb 10.

PMID:
22342955
2.

MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria.

Weniger T, Krawczyk J, Supply P, Niemann S, Harmsen D.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W326-31. doi: 10.1093/nar/gkq351. Epub 2010 May 10.

3.

SITVITWEB--a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology.

Demay C, Liens B, Burguière T, Hill V, Couvin D, Millet J, Mokrousov I, Sola C, Zozio T, Rastogi N.

Infect Genet Evol. 2012 Jun;12(4):755-66. doi: 10.1016/j.meegid.2012.02.004. Epub 2012 Feb 17.

PMID:
22365971
4.

Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates.

Allix-Béguec C, Harmsen D, Weniger T, Supply P, Niemann S.

J Clin Microbiol. 2008 Aug;46(8):2692-9. doi: 10.1128/JCM.00540-08. Epub 2008 Jun 11.

5.

Phylogeographical and molecular characterization of an emerging Mycobacterium tuberculosis clone in Trinidad and Tobago.

Millet J, Baboolal S, Akpaka PE, Ramoutar D, Rastogi N.

Infect Genet Evol. 2009 Dec;9(6):1336-44. doi: 10.1016/j.meegid.2009.09.006. Epub 2009 Sep 22.

PMID:
19778638
6.

Evaluation of 24 locus MIRU-VNTR genotyping of Mycobacterium tuberculosis isolates in Canada.

Christianson S, Wolfe J, Orr P, Karlowsky J, Levett PN, Horsman GB, Thibert L, Tang P, Sharma MK.

Tuberculosis (Edinb). 2010 Jan;90(1):31-8. doi: 10.1016/j.tube.2009.12.003. Epub 2010 Jan 6.

PMID:
20056488
7.

[Future prospects of molecular epidemiology in tuberculosis].

Matsumoto T, Iwamoto T.

Kekkaku. 2009 Dec;84(12):783-4. Japanese.

PMID:
20077862
8.

MLVA based classification of Mycobacterium tuberculosis complex lineages for a robust phylogeographic snapshot of its worldwide molecular diversity.

Hill V, Zozio T, Sadikalay S, Viegas S, Streit E, Kallenius G, Rastogi N.

PLoS One. 2012;7(9):e41991. doi: 10.1371/journal.pone.0041991. Epub 2012 Sep 11.

9.

Genotyping of the Mycobacterium tuberculosis complex using MIRUs: association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics.

Sola C, Filliol I, Legrand E, Lesjean S, Locht C, Supply P, Rastogi N.

Infect Genet Evol. 2003 Jul;3(2):125-33.

PMID:
12809807
11.

High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing.

Le Flèche P, Fabre M, Denoeud F, Koeck JL, Vergnaud G.

BMC Microbiol. 2002 Nov 27;2:37. Epub 2002 Nov 27.

12.

A conformal Bayesian network for classification of Mycobacterium tuberculosis complex lineages.

Aminian M, Shabbeer A, Bennett KP.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S4. doi: 10.1186/1471-2105-11-S3-S4.

13.

[Evaluation of the mycobacterial interspersed repetitive units typing as a practical approach in molecular epidemiology of Mycobacterium tuberculosis].

Shen GM, Zha J, Xu L, Sun B, Gui XH, Wang YF, Mei J, Gao Q.

Zhonghua Jie He He Hu Xi Za Zhi. 2005 May;28(5):292-6. Chinese.

PMID:
15949306
14.

Genotyping of Mycobacterium tuberculosis isolates from a low-endemic setting in northwestern state of Paraná in Southern Brazil.

Noguti EN, Leite CQ, Malaspina AC, Santos AC, Hirata RD, Hirata MH, Mamizuka EM, Cardoso RF.

Mem Inst Oswaldo Cruz. 2010 Sep;105(6):779-85.

15.

Utility of fast mycobacterial interspersed repetitive unit-variable number tandem repeat genotyping in clinical mycobacteriological analysis.

Allix C, Supply P, Fauville-Dufaux M.

Clin Infect Dis. 2004 Sep 15;39(6):783-9. Epub 2004 Aug 27.

PMID:
15472808
16.

Comparison of spoligotyping, mycobacterial interspersed repetitive units typing and IS6110-RFLP in a study of genotypic diversity of Mycobacterium tuberculosis in Delhi, North India.

Varma-Basil M, Kumar S, Arora J, Angrup A, Zozio T, Banavaliker JN, Singh UB, Rastogi N, Bose M.

Mem Inst Oswaldo Cruz. 2011 Aug;106(5):524-35.

17.

Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units.

Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, Locht C.

J Clin Microbiol. 2001 Oct;39(10):3563-71.

18.

Characterization of ancestral Mycobacterium tuberculosis by multiple genetic markers and proposal of genotyping strategy.

Sun YJ, Lee AS, Ng ST, Ravindran S, Kremer K, Bellamy R, Wong SY, van Soolingen D, Supply P, Paton NI.

J Clin Microbiol. 2004 Nov;42(11):5058-64.

19.

Evaluation of 24-locus MIRU-VNTR in extrapulmonary specimens: study from a tertiary centre in Mumbai.

Vadwai V, Shetty A, Supply P, Rodrigues C.

Tuberculosis (Edinb). 2012 May;92(3):264-72. doi: 10.1016/j.tube.2012.01.002. Epub 2012 Feb 8.

PMID:
22321730
20.

Utility and evaluation of new variable-number tandem-repeat systems for genotyping mycobacterial tuberculosis isolates.

Dou HY, Lu JJ, Lin CW, Chang JR, Sun JR, Su IJ.

J Microbiol Methods. 2009 Apr;77(1):127-9. doi: 10.1016/j.mimet.2009.01.007. Epub 2009 Jan 20.

PMID:
19386225

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