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Items: 1 to 20 of 110

1.

Dirichlet multinomial mixtures: generative models for microbial metagenomics.

Holmes I, Harris K, Quince C.

PLoS One. 2012;7(2):e30126. doi: 10.1371/journal.pone.0030126. Epub 2012 Feb 3.

2.

An (Anti)-Inflammatory Microbiota: Defining the Role in Inflammatory Bowel Disease?

Burman S, Hoedt EC, Pottenger S, Mohd-Najman NS, Ó Cuív P, Morrison M.

Dig Dis. 2016;34(1-2):64-71. doi: 10.1159/000443759. Epub 2016 Mar 16. Review.

PMID:
26982568
3.

Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle.

Gorvitovskaia A, Holmes SP, Huse SM.

Microbiome. 2016 Apr 12;4:15. doi: 10.1186/s40168-016-0160-7.

4.

Molecular analysis of the gut microbiota of identical twins with Crohn's disease.

Dicksved J, Halfvarson J, Rosenquist M, Järnerot G, Tysk C, Apajalahti J, Engstrand L, Jansson JK.

ISME J. 2008 Jul;2(7):716-27. doi: 10.1038/ismej.2008.37. Epub 2008 Apr 10.

PMID:
18401439
5.

Diet, the human gut microbiota, and IBD.

Wu GD, Bushmanc FD, Lewis JD.

Anaerobe. 2013 Dec;24:117-20. doi: 10.1016/j.anaerobe.2013.03.011. Epub 2013 Mar 30. Review.

PMID:
23548695
6.

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.

Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, Alm EJ.

PLoS One. 2012;7(6):e39242. doi: 10.1371/journal.pone.0039242. Epub 2012 Jun 29.

7.

Does our food (environment) change our gut microbiome ('in-vironment'): a potential role for inflammatory bowel disease?

de Wouters T, Doré J, Lepage P.

Dig Dis. 2012;30 Suppl 3:33-9. doi: 10.1159/000342595. Epub 2013 Jan 3. Review.

PMID:
23295690
8.

Stability of gut enterotypes in Korean monozygotic twins and their association with biomarkers and diet.

Lim MY, Rho M, Song YM, Lee K, Sung J, Ko G.

Sci Rep. 2014 Dec 8;4:7348. doi: 10.1038/srep07348.

9.

[Metagenomics in studying gastrointestinal tract microorganism].

Xu B, Yang Y, Li J, Tang X, Mu Y, Huang Z.

Sheng Wu Gong Cheng Xue Bao. 2013 Dec;29(12):1721-35. Review. Chinese.

PMID:
24660620
10.

BiomeNet: a Bayesian model for inference of metabolic divergence among microbial communities.

Shafiei M, Dunn KA, Chipman H, Gu H, Bielawski JP.

PLoS Comput Biol. 2014 Nov 20;10(11):e1003918. doi: 10.1371/journal.pcbi.1003918. eCollection 2014 Nov.

11.

Identifying keystone species in the human gut microbiome from metagenomic timeseries using sparse linear regression.

Fisher CK, Mehta P.

PLoS One. 2014 Jul 23;9(7):e102451. doi: 10.1371/journal.pone.0102451. eCollection 2014.

12.

Prebiotic effects: metabolic and health benefits.

Roberfroid M, Gibson GR, Hoyles L, McCartney AL, Rastall R, Rowland I, Wolvers D, Watzl B, Szajewska H, Stahl B, Guarner F, Respondek F, Whelan K, Coxam V, Davicco MJ, Léotoing L, Wittrant Y, Delzenne NM, Cani PD, Neyrinck AM, Meheust A.

Br J Nutr. 2010 Aug;104 Suppl 2:S1-63. doi: 10.1017/S0007114510003363. Review.

PMID:
20920376
13.

A retrospective metagenomics approach to studying Blastocystis.

Andersen LO, Bonde I, Nielsen HB, Stensvold CR.

FEMS Microbiol Ecol. 2015 Jul;91(7). pii: fiv072. doi: 10.1093/femsec/fiv072. Epub 2015 Jun 29.

PMID:
26130823
14.

Exploiting the functional and taxonomic structure of genomic data by probabilistic topic modeling.

Chen X, Hu X, Lim TY, Shen X, Park EK, Rosen GL.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):980-91. doi: 10.1109/TCBB.2011.113.

PMID:
21844637
15.

A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes.

Pookhao N, Sohn MB, Li Q, Jenkins I, Du R, Jiang H, An L.

Bioinformatics. 2015 Jan 15;31(2):158-65. doi: 10.1093/bioinformatics/btu635. Epub 2014 Sep 24.

16.

Terminal restriction fragment length polymorphism analysis of the gut microbiota profiles of pediatric patients with inflammatory bowel disease.

Aomatsu T, Imaeda H, Fujimoto T, Takahashi K, Yoden A, Tamai H, Fujiyama Y, Andoh A.

Digestion. 2012;86(2):129-35. doi: 10.1159/000339777. Epub 2012 Jul 27.

PMID:
22846404
17.

Taking a metagenomic view of human nutrition.

Dutton RJ, Turnbaugh PJ.

Curr Opin Clin Nutr Metab Care. 2012 Sep;15(5):448-54. doi: 10.1097/MCO.0b013e3283561133. Review.

PMID:
22878238
18.

The gut microbiota in the metagenomics era: sometimes a friend, sometimes a foe.

Serban DE.

Roum Arch Microbiol Immunol. 2011 Jul-Sep;70(3):134-40. Review.

PMID:
22570928
19.

Metagenomics: key to human gut microbiota.

Maccaferri S, Biagi E, Brigidi P.

Dig Dis. 2011;29(6):525-30. doi: 10.1159/000332966. Epub 2011 Dec 12. Review.

PMID:
22179207
20.

Familial occurrence and inheritance studies in inflammatory bowel disease.

Binder V, Orholm M.

Neth J Med. 1996 Feb;48(2):53-6. Review.

PMID:
8819799

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