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Items: 1 to 20 of 178

1.

Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity.

He R, Kim MJ, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR.

Am J Bot. 2012 Feb;99(2):232-47. doi: 10.3732/ajb.1100429. Epub 2012 Feb 1.

2.

Comparative proteomic analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale and different monocot species.

Salvato F, Balbuena TS, Nelson W, Rao RS, He R, Soderlund CA, Gang DR, Thelen JJ.

J Proteome Res. 2015 Apr 3;14(4):1779-91. doi: 10.1021/pr501157w. Epub 2015 Mar 5.

PMID:
25716083
3.

Proteome profiling of flax (Linum usitatissimum) seed: characterization of functional metabolic pathways operating during seed development.

Barvkar VT, Pardeshi VC, Kale SM, Kadoo NY, Giri AP, Gupta VS.

J Proteome Res. 2012 Dec 7;11(12):6264-76. doi: 10.1021/pr300984r. Epub 2012 Nov 27.

PMID:
23153172
4.

Molecular cloning, expression analyses and primary evolution studies of REV- and TB1-like genes in bamboo.

Peng HZ, Lin EP, Sang QL, Yao S, Jin QY, Hua XQ, Zhu MY.

Tree Physiol. 2007 Sep;27(9):1273-81.

PMID:
17545127
5.

A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes.

Barling A, Swaminathan K, Mitros T, James BT, Morris J, Ngamboma O, Hall MC, Kirkpatrick J, Alabady M, Spence AK, Hudson ME, Rokhsar DS, Moose SP.

BMC Genomics. 2013 Dec 9;14:864. doi: 10.1186/1471-2164-14-864.

6.

Sequencing of transcriptomes from two Miscanthus species reveals functional specificity in rhizomes, and clarifies evolutionary relationships.

Kim C, Lee TH, Guo H, Chung SJ, Paterson AH, Kim DS, Lee GJ.

BMC Plant Biol. 2014 May 18;14:134. doi: 10.1186/1471-2229-14-134.

7.

Transcriptomic Analysis of the Regulation of Rhizome Formation in Temperate and Tropical Lotus (Nelumbo nucifera).

Yang M, Zhu L, Pan C, Xu L, Liu Y, Ke W, Yang P.

Sci Rep. 2015 Aug 17;5:13059. doi: 10.1038/srep13059.

8.
9.

Deep transcriptome sequencing of rhizome and aerial-shoot in Sorghum propinquum.

Zhang T, Zhao X, Wang W, Huang L, Liu X, Zong Y, Zhu L, Yang D, Fu B, Li Z.

Plant Mol Biol. 2014 Feb;84(3):315-27. doi: 10.1007/s11103-013-0135-z. Epub 2013 Oct 9.

PMID:
24104862
10.

Identification of rhizome-specific genes by genome-wide differential expression analysis in Oryza longistaminata.

Hu F, Wang D, Zhao X, Zhang T, Sun H, Zhu L, Zhang F, Li L, Li Q, Tao D, Fu B, Li Z.

BMC Plant Biol. 2011 Jan 24;11:18. doi: 10.1186/1471-2229-11-18.

11.

De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome.

Su CL, Chao YT, Alex Chang YC, Chen WC, Chen CY, Lee AY, Hwa KT, Shih MC.

Plant Cell Physiol. 2011 Sep;52(9):1501-14. doi: 10.1093/pcp/pcr097. Epub 2011 Jul 19.

PMID:
21771864
12.

Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant equisetum hyemale.

Balbuena TS, He R, Salvato F, Gang DR, Thelen JJ.

Front Plant Sci. 2012 Jun 26;3:131. doi: 10.3389/fpls.2012.00131. eCollection 2012.

13.

De novo assembly and characterization of the garlic (Allium sativum) bud transcriptome by Illumina sequencing.

Sun X, Zhou S, Meng F, Liu S.

Plant Cell Rep. 2012 Oct;31(10):1823-8. doi: 10.1007/s00299-012-1295-z. Epub 2012 Jun 9.

PMID:
22684307
14.

Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.

Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A, Yadav G, Bhatia S, Chattopadhyay D, Tyagi AK, Jain M.

Plant Physiol. 2011 Aug;156(4):1661-78. doi: 10.1104/pp.111.178616. Epub 2011 Jun 8.

15.

Genome-scale transcriptome analysis of the desert poplar, Populus euphratica.

Qiu Q, Ma T, Hu Q, Liu B, Wu Y, Zhou H, Wang Q, Wang J, Liu J.

Tree Physiol. 2011 Apr;31(4):452-61. doi: 10.1093/treephys/tpr015. Epub 2011 Mar 22.

PMID:
21427158
16.

Transcriptome profiling of radish (Raphanus sativus L.) root and identification of genes involved in response to Lead (Pb) stress with next generation sequencing.

Wang Y, Xu L, Chen Y, Shen H, Gong Y, Limera C, Liu L.

PLoS One. 2013 Jun 20;8(6):e66539. doi: 10.1371/journal.pone.0066539. Print 2013.

17.

Genetic control of rhizomes and genomic localization of a major-effect growth habit QTL in perennial wildrye.

Yun L, Larson SR, Mott IW, Jensen KB, Staub JE.

Mol Genet Genomics. 2014 Jun;289(3):383-97. doi: 10.1007/s00438-014-0817-5. Epub 2014 Feb 9.

PMID:
24509730
18.

Autoimmune response and repression of mitotic cell division occur in inter-specific crosses between tetraploid wheat and Aegilops tauschii Coss. that show low temperature-induced hybrid necrosis.

Mizuno N, Shitsukawa N, Hosogi N, Park P, Takumi S.

Plant J. 2011 Oct;68(1):114-28. doi: 10.1111/j.1365-313X.2011.04667.x. Epub 2011 Jul 27.

19.

Whole transcriptome analysis using next-generation sequencing of model species Setaria viridis to support C4 photosynthesis research.

Xu J, Li Y, Ma X, Ding J, Wang K, Wang S, Tian Y, Zhang H, Zhu XG.

Plant Mol Biol. 2013 Sep;83(1-2):77-87. doi: 10.1007/s11103-013-0025-4. Epub 2013 Mar 20.

PMID:
23512102
20.

Revealing impaired pathways in the an11 mutant by high-throughput characterization of Petunia axillaris and Petunia inflata transcriptomes.

Zenoni S, D'Agostino N, Tornielli GB, Quattrocchio F, Chiusano ML, Koes R, Zethof J, Guzzo F, Delledonne M, Frusciante L, Gerats T, Pezzotti M.

Plant J. 2011 Oct;68(1):11-27. doi: 10.1111/j.1365-313X.2011.04661.x. Epub 2011 Jul 14.

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