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Items: 1 to 20 of 107

1.

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.

Taberlet P, Prud'Homme SM, Campione E, Roy J, Miquel C, Shehzad W, Gielly L, Rioux D, Choler P, Clément JC, Melodelima C, Pompanon F, Coissac E.

Mol Ecol. 2012 Apr;21(8):1816-20. doi: 10.1111/j.1365-294X.2011.05317.x. Epub 2012 Feb 2.

PMID:
22300434
2.

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems.

Epp LS, Boessenkool S, Bellemain EP, Haile J, Esposito A, Riaz T, Erséus C, Gusarov VI, Edwards ME, Johnsen A, Stenøien HK, Hassel K, Kauserud H, Yoccoz NG, Bråthen KA, Willerslev E, Taberlet P, Coissac E, Brochmann C.

Mol Ecol. 2012 Apr;21(8):1821-33. doi: 10.1111/j.1365-294X.2012.05537.x.

PMID:
22486821
3.

Tracking earthworm communities from soil DNA.

Bienert F, De Danieli S, Miquel C, Coissac E, Poillot C, Brun JJ, Taberlet P.

Mol Ecol. 2012 Apr;21(8):2017-30. doi: 10.1111/j.1365-294X.2011.05407.x. Epub 2012 Jan 17.

PMID:
22250728
4.

Towards next-generation biodiversity assessment using DNA metabarcoding.

Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E.

Mol Ecol. 2012 Apr;21(8):2045-50. doi: 10.1111/j.1365-294X.2012.05470.x.

PMID:
22486824
5.

DNA from soil mirrors plant taxonomic and growth form diversity.

Yoccoz NG, Bråthen KA, Gielly L, Haile J, Edwards ME, Goslar T, Von Stedingk H, Brysting AK, Coissac E, Pompanon F, Sønstebø JH, Miquel C, Valentini A, De Bello F, Chave J, Thuiller W, Wincker P, Cruaud C, Gavory F, Rasmussen M, Gilbert MT, Orlando L, Brochmann C, Willerslev E, Taberlet P.

Mol Ecol. 2012 Aug;21(15):3647-55. doi: 10.1111/j.1365-294X.2012.05545.x. Epub 2012 Apr 16.

PMID:
22507540
6.

Bioinformatic challenges for DNA metabarcoding of plants and animals.

Coissac E, Riaz T, Puillandre N.

Mol Ecol. 2012 Apr;21(8):1834-47. doi: 10.1111/j.1365-294X.2012.05550.x. Review.

PMID:
22486822
7.

A simplified arthropod genomic-DNA extraction protocol for polymerase chain reaction (PCR)-based specimen identification through barcoding.

Margam VM, Gachomo EW, Shukle JH, Ariyo OO, Seufferheld MJ, Kotchoni SO.

Mol Biol Rep. 2010 Oct;37(7):3631-5. doi: 10.1007/s11033-010-0014-5. Epub 2010 Mar 4.

PMID:
20204529
8.

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity.

Andersen K, Bird KL, Rasmussen M, Haile J, Breuning-Madsen H, Kjaer KH, Orlando L, Gilbert MT, Willerslev E.

Mol Ecol. 2012 Apr;21(8):1966-79. doi: 10.1111/j.1365-294X.2011.05261.x. Epub 2011 Sep 14.

PMID:
21917035
9.

Soil-specific limitations for access and analysis of soil microbial communities by metagenomics.

Lombard N, Prestat E, van Elsas JD, Simonet P.

FEMS Microbiol Ecol. 2011 Oct;78(1):31-49. doi: 10.1111/j.1574-6941.2011.01140.x. Epub 2011 Jun 28. Review.

10.
11.

Molecular Identification of Soil Eukaryotes and Focused Approaches Targeting Protist and Faunal Groups Using High-Throughput Metabarcoding.

Arjen de Groot G, Laros I, Geisen S.

Methods Mol Biol. 2016;1399:125-40. doi: 10.1007/978-1-4939-3369-3_7.

PMID:
26791500
12.

Influence of DNA extraction and PCR amplification on studies of soil fungal communities based on amplicon sequencing.

Xu L, Ravnskov S, Larsen J, Nicolaisen M.

Can J Microbiol. 2011 Dec;57(12):1062-6. doi: 10.1139/w11-100. Epub 2011 Dec 1.

PMID:
22133149
13.
14.

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity.

Cristescu ME.

Trends Ecol Evol. 2014 Oct;29(10):566-71. doi: 10.1016/j.tree.2014.08.001. Epub 2014 Aug 28.

PMID:
25175416
15.

Interplay between Senecio jacobaea and plant, soil, and aboveground insect community composition.

Bezemer TM, Harvey JA, Kowalchuk GA, Korpershoek H, van der Putten WH.

Ecology. 2006 Aug;87(8):2002-13.

PMID:
16937640
16.

Sampling strategy in molecular microbial ecology: influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities.

Ranjard L, Lejon DP, Mougel C, Schehrer L, Merdinoglu D, Chaussod R.

Environ Microbiol. 2003 Nov;5(11):1111-20.

PMID:
14641591
17.

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers.

Fahner NA, Shokralla S, Baird DJ, Hajibabaei M.

PLoS One. 2016 Jun 16;11(6):e0157505. doi: 10.1371/journal.pone.0157505. eCollection 2016.

18.

DNA barcoding methods for land plants.

Fazekas AJ, Kuzmina ML, Newmaster SG, Hollingsworth PM.

Methods Mol Biol. 2012;858:223-52. doi: 10.1007/978-1-61779-591-6_11.

PMID:
22684959
19.

Spatial patterns of plant diversity below-ground as revealed by DNA barcoding.

Kesanakurti PR, Fazekas AJ, Burgess KS, Percy DM, Newmaster SG, Graham SW, Barrett SC, Hajibabaei M, Husband BC.

Mol Ecol. 2011 Mar;20(6):1289-302. doi: 10.1111/j.1365-294X.2010.04989.x. Epub 2011 Jan 22.

PMID:
21255172
20.

Soil fungal abundance and diversity: another victim of the invasive plant Centaurea maculosa.

Broz AK, Manter DK, Vivanco JM.

ISME J. 2007 Dec;1(8):763-5. Epub 2007 Oct 11.

PMID:
18059499

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