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Items: 1 to 20 of 85

1.

Evolutionary rate covariation reveals shared functionality and coexpression of genes.

Clark NL, Alani E, Aquadro CF.

Genome Res. 2012 Apr;22(4):714-20. doi: 10.1101/gr.132647.111. Epub 2012 Jan 27.

2.

Evolutionary rate covariation in meiotic proteins results from fluctuating evolutionary pressure in yeasts and mammals.

Clark NL, Alani E, Aquadro CF.

Genetics. 2013 Feb;193(2):529-38. doi: 10.1534/genetics.112.145979. Epub 2012 Nov 26.

3.

ERC analysis: web-based inference of gene function via evolutionary rate covariation.

Wolfe NW, Clark NL.

Bioinformatics. 2015 Dec 1;31(23):3835-7. doi: 10.1093/bioinformatics/btv454. Epub 2015 Aug 4.

PMID:
26243019
4.

Coevolution of gene expression among interacting proteins.

Fraser HB, Hirsh AE, Wall DP, Eisen MB.

Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):9033-8. Epub 2004 Jun 2.

5.

The human protein coevolution network.

Tillier ER, Charlebois RL.

Genome Res. 2009 Oct;19(10):1861-71. doi: 10.1101/gr.092452.109. Epub 2009 Aug 20.

6.

Reducing the false positive rate in the non-parametric analysis of molecular coevolution.

Codoñer FM, O'Dea S, Fares MA.

BMC Evol Biol. 2008 Apr 10;8:106. doi: 10.1186/1471-2148-8-106.

7.

The origins of the evolutionary signal used to predict protein-protein interactions.

Swapna LS, Srinivasan N, Robertson DL, Lovell SC.

BMC Evol Biol. 2012 Dec 6;12:238. doi: 10.1186/1471-2148-12-238.

8.

Functional partitioning of yeast co-expression networks after genome duplication.

Conant GC, Wolfe KH.

PLoS Biol. 2006 Apr;4(4):e109. Epub 2006 Apr 4.

9.

Specificity in protein interactions and its relationship with sequence diversity and coevolution.

Hakes L, Lovell SC, Oliver SG, Robertson DL.

Proc Natl Acad Sci U S A. 2007 May 8;104(19):7999-8004. Epub 2007 Apr 27.

10.

Cooperative evolution in protein complexes of yeast from comparative analyses of its interaction network.

Vergassola M, Vespignani A, Dujon B.

Proteomics. 2005 Aug;5(12):3116-9.

PMID:
16035114
11.

Quantification of protein half-lives in the budding yeast proteome.

Belle A, Tanay A, Bitincka L, Shamir R, O'Shea EK.

Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):13004-9. Epub 2006 Aug 17.

12.
13.

Pervasive antisense transcription is evolutionarily conserved in budding yeast.

Goodman AJ, Daugharthy ER, Kim J.

Mol Biol Evol. 2013 Feb;30(2):409-21. doi: 10.1093/molbev/mss240. Epub 2012 Oct 18.

15.

Protein function, connectivity, and duplicability in yeast.

Prachumwat A, Li WH.

Mol Biol Evol. 2006 Jan;23(1):30-9. Epub 2005 Aug 24.

16.

Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data.

Oakley TH, Gu Z, Abouheif E, Patel NH, Li WH.

Mol Biol Evol. 2005 Jan;22(1):40-50. Epub 2004 Sep 8.

18.

Upstream plasticity and downstream robustness in evolution of molecular networks.

Maslov S, Sneppen K, Eriksen KA, Yan KK.

BMC Evol Biol. 2004 Mar 8;4:9.

19.

Combined phylogeny and neighborhood analysis of the evolution of the ABC transporters conferring multiple drug resistance in hemiascomycete yeasts.

Seret ML, Diffels JF, Goffeau A, Baret PV.

BMC Genomics. 2009 Oct 1;10:459. doi: 10.1186/1471-2164-10-459.

20.

Evolution of characterized phosphorylation sites in budding yeast.

Nguyen Ba AN, Moses AM.

Mol Biol Evol. 2010 Sep;27(9):2027-37. doi: 10.1093/molbev/msq090. Epub 2010 Apr 5.

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