Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 65

1.

Automated workflow for large-scale selected reaction monitoring experiments.

Malmström L, Malmström J, Selevsek N, Rosenberger G, Aebersold R.

J Proteome Res. 2012 Mar 2;11(3):1644-53. doi: 10.1021/pr200844d. Epub 2012 Feb 10.

PMID:
22283722
2.

Automated selected reaction monitoring software for accurate label-free protein quantification.

Teleman J, Karlsson C, Waldemarson S, Hansson K, James P, Malmström J, Levander F.

J Proteome Res. 2012 Jul 6;11(7):3766-73. doi: 10.1021/pr300256x. Epub 2012 Jun 14.

3.

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.

Bouyssié D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B.

Mol Cell Proteomics. 2007 Sep;6(9):1621-37. Epub 2007 May 28.

5.

Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes.

Karlsson C, Malmström L, Aebersold R, Malmström J.

Nat Commun. 2012;3:1301. doi: 10.1038/ncomms2297.

6.

Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry-based proteomics.

Malmström J, Karlsson C, Nordenfelt P, Ossola R, Weisser H, Quandt A, Hansson K, Aebersold R, Malmström L, Björck L.

J Biol Chem. 2012 Jan 6;287(2):1415-25. doi: 10.1074/jbc.M111.267674. Epub 2011 Nov 23.

7.

Data processing and analysis using ProteinChip® data manager software.

Dalmasso EA, Caseñas D.

Methods Mol Biol. 2012;818:35-48. doi: 10.1007/978-1-61779-418-6_3.

PMID:
22083814
8.

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana.

Baerenfaller K, Hirsch-Hoffmann M, Svozil J, Hull R, Russenberger D, Bischof S, Lu Q, Gruissem W, Baginsky S.

Integr Biol (Camb). 2011 Mar;3(3):225-37. doi: 10.1039/c0ib00078g. Epub 2011 Jan 24.

PMID:
21264403
9.

High throughput proteome screening for biomarker detection.

Pan S, Zhang H, Rush J, Eng J, Zhang N, Patterson D, Comb MJ, Aebersold R.

Mol Cell Proteomics. 2005 Feb;4(2):182-90. Epub 2005 Jan 5.

10.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

J Proteome Res. 2009 Jun;8(6):3037-43. doi: 10.1021/pr900189c.

PMID:
19354269
11.

An exclusion list based label-free proteome quantification approach using an LTQ Orbitrap.

Muntel J, Hecker M, Becher D.

Rapid Commun Mass Spectrom. 2012 Mar 30;26(6):701-9. doi: 10.1002/rcm.6147.

PMID:
22328225
12.

Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.

Slysz GW, Baker CA, Bozsa BM, Dang A, Percy AJ, Bennett M, Schriemer DC.

BMC Bioinformatics. 2009 May 27;10:162. doi: 10.1186/1471-2105-10-162.

13.

Automated selected reaction monitoring data analysis workflow for large-scale targeted proteomic studies.

Surinova S, Hüttenhain R, Chang CY, Espona L, Vitek O, Aebersold R.

Nat Protoc. 2013 Aug;8(8):1602-19. doi: 10.1038/nprot.2013.091. Epub 2013 Jul 25.

PMID:
23887179
14.

Bioinformatics support for high-throughput proteomics.

Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F.

J Biotechnol. 2003 Dec 19;106(2-3):147-56.

PMID:
14651857
15.

Mass spectrometric discovery and selective reaction monitoring (SRM) of putative protein biomarker candidates in first trimester Trisomy 21 maternal serum.

Lopez MF, Kuppusamy R, Sarracino DA, Prakash A, Athanas M, Krastins B, Rezai T, Sutton JN, Peterman S, Nicolaides K.

J Proteome Res. 2011 Jan 7;10(1):133-42. doi: 10.1021/pr100153j. Epub 2010 Jun 4.

PMID:
20499897
16.

Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry.

Aiche S, Sachsenberg T, Kenar E, Walzer M, Wiswedel B, Kristl T, Boyles M, Duschl A, Huber CG, Berthold MR, Reinert K, Kohlbacher O.

Proteomics. 2015 Apr;15(8):1443-7. doi: 10.1002/pmic.201400391. Epub 2015 Feb 14.

17.

Label-free quantitation, an extension to 2DB.

Allmer J.

Amino Acids. 2010 Apr;38(4):1075-87. doi: 10.1007/s00726-009-0317-9. Epub 2009 Jul 3.

PMID:
19575279
18.

Generic workflow for quality assessment of quantitative label-free LC-MS analysis.

Sandin M, Krogh M, Hansson K, Levander F.

Proteomics. 2011 Mar;11(6):1114-24. doi: 10.1002/pmic.201000493. Epub 2011 Feb 7.

PMID:
21298787
20.

Automated reporting from gel-based proteomics experiments using the open source Proteios database application.

Levander F, Krogh M, Wårell K, Gärdén P, James P, Häkkinen J.

Proteomics. 2007 Mar;7(5):668-74.

PMID:
17295359

Supplemental Content

Support Center