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Items: 1 to 20 of 51

1.

Toward a systems level view of the ECM and related proteins: a framework for the systematic definition and analysis of biological systems.

Cromar GL, Xiong X, Chautard E, Ricard-Blum S, Parkinson J.

Proteins. 2012 Jun;80(6):1522-44. doi: 10.1002/prot.24036. Epub 2012 Feb 13. Erratum in: Proteins. 2012 Nov;80(11):2643.

PMID:
22275077
2.

Defining a modular signalling network from the fly interactome.

Baudot A, Angelelli JB, Guénoche A, Jacq B, Brun C.

BMC Syst Biol. 2008 May 19;2:45. doi: 10.1186/1752-0509-2-45.

3.

Towards the mammalian interactome: Inference of a core mammalian interaction set in mouse.

Shin CJ, Davis MJ, Ragan MA.

Proteomics. 2009 Dec;9(23):5256-66. doi: 10.1002/pmic.200900262.

PMID:
19834899
4.

Systematic identification of common functional modules related to heart failure with different etiologies.

Xiao Y, Xu C, Xu L, Guan J, Ping Y, Fan H, Li Y, Zhao H, Li X.

Gene. 2012 May 15;499(2):332-8. doi: 10.1016/j.gene.2012.03.039. Epub 2012 Mar 16.

PMID:
22446039
5.

Interactome: gateway into systems biology.

Cusick ME, Klitgord N, Vidal M, Hill DE.

Hum Mol Genet. 2005 Oct 15;14 Spec No. 2:R171-81. Epub 2005 Sep 14. Review.

PMID:
16162640
6.

Extracellular matrix production by human osteoblasts cultured on biodegradable polymers applicable for tissue engineering.

El-Amin SF, Lu HH, Khan Y, Burems J, Mitchell J, Tuan RS, Laurencin CT.

Biomaterials. 2003 Mar;24(7):1213-21.

PMID:
12527262
7.

Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays.

Braun P.

Proteomics. 2012 May;12(10):1499-518. doi: 10.1002/pmic.201100598. Review.

PMID:
22589225
8.

Adhesion-modulating/matricellular ECM protein families: a structural, functional and evolutionary appraisal.

Mosher DF, Adams JC.

Matrix Biol. 2012 Apr;31(3):155-61. doi: 10.1016/j.matbio.2012.01.003. Epub 2012 Jan 14. Review.

PMID:
22265890
9.

The use of network analyses for elucidating mechanisms in cardiovascular disease.

Diez D, Wheelock AM, Goto S, Haeggström JZ, Paulsson-Berne G, Hansson GK, Hedin U, Gabrielsen A, Wheelock CE.

Mol Biosyst. 2010 Feb;6(2):289-304. doi: 10.1039/b912078e. Epub 2009 Oct 16. Review.

PMID:
20094647
10.

A data integration approach for cell cycle analysis oriented to model simulation in systems biology.

Alfieri R, Merelli I, Mosca E, Milanesi L.

BMC Syst Biol. 2007 Aug 1;1:35.

11.

Systems biological approach on neurological disorders: a novel molecular connectivity to aging and psychiatric diseases.

Ahmed SS, Ahameethunisa AR, Santosh W, Chakravarthy S, Kumar S.

BMC Syst Biol. 2011 Jan 12;5:6. doi: 10.1186/1752-0509-5-6.

12.

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression.

De Bodt S, Proost S, Vandepoele K, Rouzé P, Van de Peer Y.

BMC Genomics. 2009 Jun 29;10:288. doi: 10.1186/1471-2164-10-288.

13.

MatrixDB, the extracellular matrix interaction database.

Chautard E, Fatoux-Ardore M, Ballut L, Thierry-Mieg N, Ricard-Blum S.

Nucleic Acids Res. 2011 Jan;39(Database issue):D235-40. doi: 10.1093/nar/gkq830. Epub 2010 Sep 17.

14.

The Core Diseasome.

Janjić V, Pržulj N.

Mol Biosyst. 2012 Oct;8(10):2614-25. doi: 10.1039/c2mb25230a.

PMID:
22820726
15.

Modular organization of protein interaction networks.

Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH.

Bioinformatics. 2007 Jan 15;23(2):207-14. Epub 2006 Nov 8. Erratum in: Bioinformatics. 2007 Apr 1;23(7):916.

PMID:
17092991
16.

Probabilistic functional gene societies.

Lee I.

Prog Biophys Mol Biol. 2011 Aug;106(2):435-42. doi: 10.1016/j.pbiomolbio.2011.01.003. Epub 2011 Jan 31. Review.

PMID:
21281658
17.

Regulation of chondrocyte gene expression.

Hering TM.

Front Biosci. 1999 Oct 15;4:D743-61.

PMID:
10525476
18.

Transcriptomics and systems biology analysis in identification of specific pathways involved in cacao resistance and susceptibility to witches' broom disease.

da Hora Junior BT, Poloni Jde F, Lopes MA, Dias CV, Gramacho KP, Schuster I, Sabau X, Cascardo JC, Mauro SM, Gesteira Ada S, Bonatto D, Micheli F.

Mol Biosyst. 2012 Apr;8(5):1507-19. doi: 10.1039/c2mb05421c. Epub 2012 Feb 28.

PMID:
22373587
19.

Influence of cyclical mechanical strain on extracellular matrix gene expression in human lamina cribrosa cells in vitro.

Kirwan RP, Fenerty CH, Crean J, Wordinger RJ, Clark AF, O'Brien CJ.

Mol Vis. 2005 Sep 23;11:798-810.

20.

Protease proteomics: revealing protease in vivo functions using systems biology approaches.

Doucet A, Overall CM.

Mol Aspects Med. 2008 Oct;29(5):339-58. doi: 10.1016/j.mam.2008.04.003. Epub 2008 May 1. Review.

PMID:
18571712

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