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Items: 1 to 20 of 209

1.

A semantic problem solving environment for integrative parasite research: identification of intervention targets for Trypanosoma cruzi.

Parikh PP, Minning TA, Nguyen V, Lalithsena S, Asiaee AH, Sahoo SS, Doshi P, Tarleton R, Sheth AP.

PLoS Negl Trop Dis. 2012 Jan;6(1):e1458. doi: 10.1371/journal.pntd.0001458. Epub 2012 Jan 17.

2.

A semantic proteomics dashboard (SemPoD) for data management in translational research.

Jayapandian CP, Zhao M, Ewing RM, Zhang GQ, Sahoo SS.

BMC Syst Biol. 2012;6 Suppl 3:S20. doi: 10.1186/1752-0509-6-S3-S20. Epub 2012 Dec 17.

3.

A unified framework for managing provenance information in translational research.

Sahoo SS, Nguyen V, Bodenreider O, Parikh P, Minning T, Sheth AP.

BMC Bioinformatics. 2011 Nov 29;12:461. doi: 10.1186/1471-2105-12-461.

4.

An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence.

Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP.

J Biomed Inform. 2008 Oct;41(5):752-65. doi: 10.1016/j.jbi.2008.02.006. Epub 2008 Feb 29.

5.

AlzPharm: integration of neurodegeneration data using RDF.

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.

6.

Scaling the walls of discovery: using semantic metadata for integrative problem solving.

Manning M, Aggarwal A, Gao K, Tucker-Kellogg G.

Brief Bioinform. 2009 Mar;10(2):164-76. doi: 10.1093/bib/bbp007.

PMID:
19304872
7.

SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services.

Gessler DD, Schiltz GS, May GD, Avraham S, Town CD, Grant D, Nelson RT.

BMC Bioinformatics. 2009 Sep 23;10:309. doi: 10.1186/1471-2105-10-309.

8.

Using web ontology language to integrate heterogeneous databases in the neurosciences.

Lam HY, Marenco L, Shepherd GM, Miller PL, Cheung KH.

AMIA Annu Symp Proc. 2006:464-8.

9.

KaBOB: ontology-based semantic integration of biomedical databases.

Livingston KM, Bada M, Baumgartner WA Jr, Hunter LE.

BMC Bioinformatics. 2015 Apr 23;16:126. doi: 10.1186/s12859-015-0559-3.

10.

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Cheung KH, Yip KY, Smith A, Deknikker R, Masiar A, Gerstein M.

Bioinformatics. 2005 Jun;21 Suppl 1:i85-96.

PMID:
15961502
11.

A semantic web ontology for small molecules and their biological targets.

Choi J, Davis MJ, Newman AF, Ragan MA.

J Chem Inf Model. 2010 May 24;50(5):732-41. doi: 10.1021/ci900461j.

PMID:
20405959
12.

Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous xanthomatosis.

Taboada M, Martínez D, Pilo B, Jiménez-Escrig A, Robinson PN, Sobrido MJ.

BMC Med Inform Decis Mak. 2012 Jul 31;12:78. doi: 10.1186/1472-6947-12-78.

13.

BioGateway: a semantic systems biology tool for the life sciences.

Antezana E, Blondé W, Egaña M, Rutherford A, Stevens R, De Baets B, Mironov V, Kuiper M.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S11. doi: 10.1186/1471-2105-10-S10-S11.

14.

Federated ontology-based queries over cancer data.

González-Beltrán A, Tagger B, Finkelstein A.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S9. doi: 10.1186/1471-2105-13-S1-S9.

15.

A journey to Semantic Web query federation in the life sciences.

Cheung KH, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S10. doi: 10.1186/1471-2105-10-S10-S10.

16.

Integration of prostate cancer clinical data using an ontology.

Min H, Manion FJ, Goralczyk E, Wong YN, Ross E, Beck JR.

J Biomed Inform. 2009 Dec;42(6):1035-45. doi: 10.1016/j.jbi.2009.05.007. Epub 2009 Jun 2.

17.

Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases.

Wollbrett J, Larmande P, de Lamotte F, Ruiz M.

BMC Bioinformatics. 2013 Apr 15;14:126. doi: 10.1186/1471-2105-14-126.

18.

Semantic integration of gene expression analysis tools and data sources using software connectors.

Miyazaki FA, Guardia GD, Vêncio RZ, de Farias CR.

BMC Genomics. 2013 Oct 25;14 Suppl 6:S2. doi: 10.1186/1471-2164-14-S6-S2.

19.

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.

Smith AK, Cheung KH, Yip KY, Schultz M, Gerstein MK.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S5. Review.

20.

Moby and Moby 2: creatures of the deep (web).

Vandervalk BP, McCarthy EL, Wilkinson MD.

Brief Bioinform. 2009 Mar;10(2):114-28. doi: 10.1093/bib/bbn051. Epub 2009 Jan 16.

PMID:
19151099

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