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Items: 1 to 20 of 221

1.

Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization.

Chepelev I, Wei G, Wangsa D, Tang Q, Zhao K.

Cell Res. 2012 Mar;22(3):490-503. doi: 10.1038/cr.2012.15. Epub 2012 Jan 24.

2.

High-resolution profiling of histone methylations in the human genome.

Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K.

Cell. 2007 May 18;129(4):823-37.

3.

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.

Zhang Y, Wong CH, Birnbaum RY, Li G, Favaro R, Ngan CY, Lim J, Tai E, Poh HM, Wong E, Mulawadi FH, Sung WK, Nicolis S, Ahituv N, Ruan Y, Wei CL.

Nature. 2013 Dec 12;504(7479):306-310. doi: 10.1038/nature12716. Epub 2013 Nov 10.

4.

Global view of enhancer-promoter interactome in human cells.

He B, Chen C, Teng L, Tan K.

Proc Natl Acad Sci U S A. 2014 May 27;111(21):E2191-9. doi: 10.1073/pnas.1320308111. Epub 2014 May 12.

5.

The long-range interaction landscape of gene promoters.

Sanyal A, Lajoie BR, Jain G, Dekker J.

Nature. 2012 Sep 6;489(7414):109-13. doi: 10.1038/nature11279.

6.

Eukaryotic enhancers: common features, regulation, and participation in diseases.

Erokhin M, Vassetzky Y, Georgiev P, Chetverina D.

Cell Mol Life Sci. 2015 Jun;72(12):2361-75. doi: 10.1007/s00018-015-1871-9. Epub 2015 Feb 26. Review.

PMID:
25715743
7.

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.

Schoenfelder S, Furlan-Magaril M, Mifsud B, Tavares-Cadete F, Sugar R, Javierre BM, Nagano T, Katsman Y, Sakthidevi M, Wingett SW, Dimitrova E, Dimond A, Edelman LB, Elderkin S, Tabbada K, Darbo E, Andrews S, Herman B, Higgs A, LeProust E, Osborne CS, Mitchell JA, Luscombe NM, Fraser P.

Genome Res. 2015 Apr;25(4):582-97. doi: 10.1101/gr.185272.114. Epub 2015 Mar 9.

8.

Chromatin insulators and long-distance interactions in Drosophila.

Kyrchanova O, Georgiev P.

FEBS Lett. 2014 Jan 3;588(1):8-14. doi: 10.1016/j.febslet.2013.10.039. Epub 2013 Nov 5. Review.

9.

Chromatin signatures of active enhancers.

Spicuglia S, Vanhille L.

Nucleus. 2012 Mar 1;3(2):126-31. doi: 10.4161/nucl.19232. Epub 2012 Mar 1. Review.

10.

Genome-wide phosphoacetylation of histone H3 at Drosophila enhancers and promoters.

Kellner WA, Ramos E, Van Bortle K, Takenaka N, Corces VG.

Genome Res. 2012 Jun;22(6):1081-8. doi: 10.1101/gr.136929.111. Epub 2012 Apr 16.

11.

The chromatin fingerprint of gene enhancer elements.

Zentner GE, Scacheri PC.

J Biol Chem. 2012 Sep 7;287(37):30888-96. doi: 10.1074/jbc.R111.296491. Epub 2012 Sep 5. Review.

12.

Genome-Wide Mapping Targets of the Metazoan Chromatin Remodeling Factor NURF Reveals Nucleosome Remodeling at Enhancers, Core Promoters and Gene Insulators.

Kwon SY, Grisan V, Jang B, Herbert J, Badenhorst P.

PLoS Genet. 2016 Apr 5;12(4):e1005969. doi: 10.1371/journal.pgen.1005969. eCollection 2016 Apr.

13.

Locus-specific editing of histone modifications at endogenous enhancers.

Mendenhall EM, Williamson KE, Reyon D, Zou JY, Ram O, Joung JK, Bernstein BE.

Nat Biotechnol. 2013 Dec;31(12):1133-6. doi: 10.1038/nbt.2701. Epub 2013 Sep 8.

14.

A high-resolution map of active promoters in the human genome.

Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B.

Nature. 2005 Aug 11;436(7052):876-80. Epub 2005 Jun 29.

15.

Histone modifications at human enhancers reflect global cell-type-specific gene expression.

Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Crawford GE, Kellis M, Ren B.

Nature. 2009 May 7;459(7243):108-12. doi: 10.1038/nature07829. Epub 2009 Mar 18.

16.

Combinatorial patterns of histone acetylations and methylations in the human genome.

Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K.

Nat Genet. 2008 Jul;40(7):897-903. doi: 10.1038/ng.154. Epub 2008 Jun 15.

17.

Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states.

Li WV, Razaee ZS, Li JJ.

BMC Genomics. 2016 Jan 11;17 Suppl 1:10. doi: 10.1186/s12864-015-2303-9.

18.

Chromatin and epigenetic features of long-range gene regulation.

Harmston N, Lenhard B.

Nucleic Acids Res. 2013 Aug;41(15):7185-99. doi: 10.1093/nar/gkt499. Epub 2013 Jun 13. Review.

19.

Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes.

Yao L, Berman BP, Farnham PJ.

Crit Rev Biochem Mol Biol. 2015;50(6):550-73. doi: 10.3109/10409238.2015.1087961. Epub 2015 Oct 8. Review.

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