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Items: 1 to 20 of 84

1.

Three-dimensional folding and functional organization principles of the Drosophila genome.

Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G.

Cell. 2012 Feb 3;148(3):458-72. doi: 10.1016/j.cell.2012.01.010. Epub 2012 Jan 19.

2.

Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains.

Hou C, Li L, Qin ZS, Corces VG.

Mol Cell. 2012 Nov 9;48(3):471-84. doi: 10.1016/j.molcel.2012.08.031. Epub 2012 Oct 4.

3.

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.

Boettiger AN, Bintu B, Moffitt JR, Wang S, Beliveau BJ, Fudenberg G, Imakaev M, Mirny LA, Wu CT, Zhuang X.

Nature. 2016 Jan 21;529(7586):418-22. doi: 10.1038/nature16496. Epub 2016 Jan 13.

4.

Insulators, not Polycomb response elements, are required for long-range interactions between Polycomb targets in Drosophila melanogaster.

Li HB, Müller M, Bahechar IA, Kyrchanova O, Ohno K, Georgiev P, Pirrotta V.

Mol Cell Biol. 2011 Feb;31(4):616-25. doi: 10.1128/MCB.00849-10. Epub 2010 Dec 6.

5.

Packaging the fly genome: domains and dynamics.

White R.

Brief Funct Genomics. 2012 Sep;11(5):347-55. doi: 10.1093/bfgp/els020. Epub 2012 Sep 3. Review.

PMID:
22945596
6.

Gene density profile reveals the marking of late replicated domains in the Drosophila melanogaster genome.

Belyakin SN, Babenko VN, Maksimov DA, Shloma VV, Kvon EZ, Belyaeva ES, Zhimulev IF.

Chromosoma. 2010 Dec;119(6):589-600. doi: 10.1007/s00412-010-0280-y. Epub 2010 Jul 3.

PMID:
20602235
7.

Global chromatin domain organization of the Drosophila genome.

de Wit E, Braunschweig U, Greil F, Bussemaker HJ, van Steensel B.

PLoS Genet. 2008 Mar 28;4(3):e1000045. doi: 10.1371/journal.pgen.1000045.

8.

Chromosomal domains: epigenetic contexts and functional implications of genomic compartmentalization.

Tanay A, Cavalli G.

Curr Opin Genet Dev. 2013 Apr;23(2):197-203. doi: 10.1016/j.gde.2012.12.009. Epub 2013 Feb 14. Review.

9.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.

Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22.

10.

Late replication domains are evolutionary conserved in the Drosophila genome.

Andreyenkova NG, Kolesnikova TD, Makunin IV, Pokholkova GV, Boldyreva LV, Zykova TY, Zhimulev IF, Belyaeva ES.

PLoS One. 2013 Dec 31;8(12):e83319. doi: 10.1371/journal.pone.0083319. eCollection 2013.

11.

Stable Chromosome Condensation Revealed by Chromosome Conformation Capture.

Eagen KP, Hartl TA, Kornberg RD.

Cell. 2015 Nov 5;163(4):934-46. doi: 10.1016/j.cell.2015.10.026.

12.

Chromosome conformation capture on chip in single Drosophila melanogaster tissues.

Tolhuis B, Blom M, van Lohuizen M.

Methods. 2012 Nov;58(3):231-42. doi: 10.1016/j.ymeth.2012.04.003. Epub 2012 Apr 16.

PMID:
22525789
13.

RNAi components are required for nuclear clustering of Polycomb group response elements.

Grimaud C, Bantignies F, Pal-Bhadra M, Ghana P, Bhadra U, Cavalli G.

Cell. 2006 Mar 10;124(5):957-71.

14.

Poly(ADP-ribosyl)ation regulates insulator function and intrachromosomal interactions in Drosophila.

Ong CT, Van Bortle K, Ramos E, Corces VG.

Cell. 2013 Sep 26;155(1):148-59. doi: 10.1016/j.cell.2013.08.052. Epub 2013 Sep 19.

15.

Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.

Vogelmann J, Le Gall A, Dejardin S, Allemand F, Gamot A, Labesse G, Cuvier O, Nègre N, Cohen-Gonsaud M, Margeat E, Nöllmann M.

PLoS Genet. 2014 Aug 28;10(8):e1004544. doi: 10.1371/journal.pgen.1004544. eCollection 2014 Aug.

16.

Polycomb, pairing and PIWI--RNA silencing and nuclear interactions.

Kavi HH, Fernandez HR, Xie W, Birchler JA.

Trends Biochem Sci. 2006 Sep;31(9):485-7. Epub 2006 Jul 27.

PMID:
16876419
17.

The nuclear organization of Polycomb/Trithorax group response elements in larval tissues of Drosophila melanogaster.

Fedorova E, Sadoni N, Dahlsveen IK, Koch J, Kremmer E, Eick D, Paro R, Zink D.

Chromosome Res. 2008;16(4):649-73. doi: 10.1007/s10577-008-1218-6. Epub 2008 Jun 3.

PMID:
18560994
18.

Nature and function of insulator protein binding sites in the Drosophila genome.

Schwartz YB, Linder-Basso D, Kharchenko PV, Tolstorukov MY, Kim M, Li HB, Gorchakov AA, Minoda A, Shanower G, Alekseyenko AA, Riddle NC, Jung YL, Gu T, Plachetka A, Elgin SC, Kuroda MI, Park PJ, Savitsky M, Karpen GH, Pirrotta V.

Genome Res. 2012 Nov;22(11):2188-98. doi: 10.1101/gr.138156.112. Epub 2012 Jul 5. Erratum in: Genome Res. 2013 Feb;23(2):409.

19.

The insulator protein SU(HW) fine-tunes nuclear lamina interactions of the Drosophila genome.

van Bemmel JG, Pagie L, Braunschweig U, Brugman W, Meuleman W, Kerkhoven RM, van Steensel B.

PLoS One. 2010 Nov 24;5(11):e15013. doi: 10.1371/journal.pone.0015013.

20.

Quantified effects of chromosome-nuclear envelope attachments on 3D organization of chromosomes.

Kinney NA, Onufriev AV, Sharakhov IV.

Nucleus. 2015;6(3):212-24. doi: 10.1080/19491034.2015.1056441.

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