Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 102

1.

Protein-RNA interactions: new genomic technologies and perspectives.

König J, Zarnack K, Luscombe NM, Ule J.

Nat Rev Genet. 2012 Jan 18;13(2):77-83. doi: 10.1038/nrg3141. Review. Erratum in: Nat Rev Genet. 2012 Mar;13(3):220.

PMID:
22251872
2.

Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions.

Van Nostrand EL, Huelga SC, Yeo GW.

Adv Exp Med Biol. 2016;907:1-28. doi: 10.1007/978-3-319-29073-7_1.

3.

Systems perspectives on mRNA processing.

McKee AE, Silver PA.

Cell Res. 2007 Jul;17(7):581-90. Review.

4.

Biochemical and bioinformatic methods for elucidating the role of RNA-protein interactions in posttranscriptional regulation.

Kloetgen A, Münch PC, Borkhardt A, Hoell JI, McHardy AC.

Brief Funct Genomics. 2015 Mar;14(2):102-14. doi: 10.1093/bfgp/elu020. Epub 2014 Jun 20. Review.

5.

RNA-protein interactions: an overview.

Re A, Joshi T, Kulberkyte E, Morris Q, Workman CT.

Methods Mol Biol. 2014;1097:491-521. doi: 10.1007/978-1-62703-709-9_23. Review.

PMID:
24639174
6.

Probing RNA-protein networks: biochemistry meets genomics.

Campbell ZT, Wickens M.

Trends Biochem Sci. 2015 Mar;40(3):157-64. doi: 10.1016/j.tibs.2015.01.003. Epub 2015 Jan 27. Review.

7.

Genome-wide analysis of YB-1-RNA interactions reveals a novel role of YB-1 in miRNA processing in glioblastoma multiforme.

Wu SL, Fu X, Huang J, Jia TT, Zong FY, Mu SR, Zhu H, Yan Y, Qiu S, Wu Q, Yan W, Peng Y, Chen J, Hui J.

Nucleic Acids Res. 2015 Sep 30;43(17):8516-28. doi: 10.1093/nar/gkv779. Epub 2015 Aug 3.

8.

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T.

J Vis Exp. 2010 Jul 2;(41). pii: 2034. doi: 10.3791/2034.

9.

Design and bioinformatics analysis of genome-wide CLIP experiments.

Wang T, Xiao G, Chu Y, Zhang MQ, Corey DR, Xie Y.

Nucleic Acids Res. 2015 Jun 23;43(11):5263-74. doi: 10.1093/nar/gkv439. Epub 2015 May 9. Review.

10.

Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles.

Mandal PK, Ewing AD, Hancks DC, Kazazian HH Jr.

Hum Mol Genet. 2013 Sep 15;22(18):3730-48. doi: 10.1093/hmg/ddt225. Epub 2013 May 21.

11.

Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP.

Hauer C, Curk T, Anders S, Schwarzl T, Alleaume AM, Sieber J, Hollerer I, Bhuvanagiri M, Huber W, Hentze MW, Kulozik AE.

Nat Commun. 2015 Aug 11;6:7921. doi: 10.1038/ncomms8921.

12.

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis.

Moore MJ, Zhang C, Gantman EC, Mele A, Darnell JC, Darnell RB.

Nat Protoc. 2014 Feb;9(2):263-93. doi: 10.1038/nprot.2014.012. Epub 2014 Jan 9. Erratum in: Nat Protoc. 2016 Mar;11(3):616.

13.

Advances in the characterization of RNA-binding proteins.

Marchese D, de Groot NS, Lorenzo Gotor N, Livi CM, Tartaglia GG.

Wiley Interdiscip Rev RNA. 2016 Nov;7(6):793-810. doi: 10.1002/wrna.1378. Epub 2016 Aug 8. Review.

14.

Transcriptome-wide identification of in vivo interactions between RNAs and RNA-binding proteins by RIP and PAR-CLIP assays.

González-Buendía E, Saldaña-Meyer R, Meier K, Recillas-Targa F.

Methods Mol Biol. 2015;1288:413-28. doi: 10.1007/978-1-4939-2474-5_24.

PMID:
25827894
15.

A census of human RNA-binding proteins.

Gerstberger S, Hafner M, Tuschl T.

Nat Rev Genet. 2014 Dec;15(12):829-45. doi: 10.1038/nrg3813. Epub 2014 Nov 4. Review.

PMID:
25365966
16.

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J.

J Vis Exp. 2011 Apr 30;(50). pii: 2638. doi: 10.3791/2638.

17.

Advances in RIP-chip analysis : RNA-binding protein immunoprecipitation-microarray profiling.

Baroni TE, Chittur SV, George AD, Tenenbaum SA.

Methods Mol Biol. 2008;419:93-108. doi: 10.1007/978-1-59745-033-1_6.

PMID:
18369977
18.

MIWI-independent small RNAs (MSY-RNAs) bind to the RNA-binding protein, MSY2, in male germ cells.

Xu M, Medvedev S, Yang J, Hecht NB.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12371-6. doi: 10.1073/pnas.0903944106. Epub 2009 Jul 13.

19.

Emerging properties of nuclear RNP biogenesis and export.

Oeffinger M, Montpetit B.

Curr Opin Cell Biol. 2015 Jun;34:46-53. doi: 10.1016/j.ceb.2015.04.007. Epub 2015 May 15. Review.

PMID:
25938908
20.

DNA damage: RNA-binding proteins protect from near and far.

Dutertre M, Lambert S, Carreira A, Amor-Guéret M, Vagner S.

Trends Biochem Sci. 2014 Mar;39(3):141-9. doi: 10.1016/j.tibs.2014.01.003. Epub 2014 Feb 14. Review.

PMID:
24534650

Supplemental Content

Support Center