Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 106

1.

Structural bias in T4 RNA ligase-mediated 3'-adapter ligation.

Zhuang F, Fuchs RT, Sun Z, Zheng Y, Robb GB.

Nucleic Acids Res. 2012 Apr;40(7):e54. doi: 10.1093/nar/gkr1263. Epub 2012 Jan 12.

2.

Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure.

Fuchs RT, Sun Z, Zhuang F, Robb GB.

PLoS One. 2015 May 5;10(5):e0126049. doi: 10.1371/journal.pone.0126049. eCollection 2015.

3.

T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis.

Viollet S, Fuchs RT, Munafo DB, Zhuang F, Robb GB.

BMC Biotechnol. 2011 Jul 1;11:72. doi: 10.1186/1472-6750-11-72.

4.

Efficient synthesis of stably adenylated DNA and RNA adapters for microRNA capture using T4 RNA ligase 1.

Song Y, Liu KJ, Wang TH.

Sci Rep. 2015 Oct 26;5:15620. doi: 10.1038/srep15620.

5.
6.

Adenylylation of small RNA sequencing adapters using the TS2126 RNA ligase I.

Lama L, Ryan K.

RNA. 2016 Jan;22(1):155-61. doi: 10.1261/rna.054999.115. Epub 2015 Nov 13.

7.

Elimination of ligation dependent artifacts in T4 RNA ligase to achieve high efficiency and low bias microRNA capture.

Song Y, Liu KJ, Wang TH.

PLoS One. 2014 Apr 10;9(4):e94619. doi: 10.1371/journal.pone.0094619. eCollection 2014.

8.

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

Hafner M, Renwick N, Brown M, Mihailović A, Holoch D, Lin C, Pena JT, Nusbaum JD, Morozov P, Ludwig J, Ojo T, Luo S, Schroth G, Tuschl T.

RNA. 2011 Sep;17(9):1697-712. doi: 10.1261/rna.2799511. Epub 2011 Jul 20.

9.

RNA ligases.

Nichols NM, Tabor S, McReynolds LA.

Curr Protoc Mol Biol. 2008 Oct;Chapter 3:Unit3.15. doi: 10.1002/0471142727.mb0315s84.

PMID:
18972386
10.

A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters.

Chen YR, Zheng Y, Liu B, Zhong S, Giovannoni J, Fei Z.

Plant Methods. 2012 Sep 20;8(1):41. doi: 10.1186/1746-4811-8-41.

11.
12.

Small RNA Profiling by Next-Generation Sequencing Using High-Definition Adapters.

Billmeier M, Xu P.

Methods Mol Biol. 2017;1580:45-57. doi: 10.1007/978-1-4939-6866-4_4.

PMID:
28439825
13.

Reducing ligation bias of small RNAs in libraries for next generation sequencing.

Sorefan K, Pais H, Hall AE, Kozomara A, Griffiths-Jones S, Moulton V, Dalmay T.

Silence. 2012 May 30;3(1):4. doi: 10.1186/1758-907X-3-4.

14.

Synthesis and activity of modified cytidine 5'-monophosphate probes for T4 RNA ligase 1.

Kore AR, Charles I, Yang L, Kuersten S.

Nucleosides Nucleotides Nucleic Acids. 2009 Apr;28(4):292-302. doi: 10.1080/15257770902946181.

PMID:
20183582
15.

Detection of reverse transcriptase termination sites using cDNA ligation and massive parallel sequencing.

Kielpinski LJ, Boyd M, Sandelin A, Vinther J.

Methods Mol Biol. 2013;1038:213-31. doi: 10.1007/978-1-62703-514-9_13.

PMID:
23872978
16.

Polynucleotide 3'-terminal phosphate modifications by RNA and DNA ligases.

Zhelkovsky AM, McReynolds LA.

J Biol Chem. 2014 Nov 28;289(48):33608-16. doi: 10.1074/jbc.M114.612929. Epub 2014 Oct 16.

17.

RNA captor: a tool for RNA characterization.

Clepet C.

PLoS One. 2011 Apr 13;6(4):e18445. doi: 10.1371/journal.pone.0018445.

18.

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing.

Jayaprakash AD, Jabado O, Brown BD, Sachidanandam R.

Nucleic Acids Res. 2011 Nov;39(21):e141. doi: 10.1093/nar/gkr693. Epub 2011 Sep 2.

19.

Y-ligation: an efficient method for ligating single-stranded DNAs and RNAs with T4 RNA ligase.

Nishigaki K, Taguchi K, Kinoshita Y, Aita T, Husimi Y.

Mol Divers. 1998;4(3):187-90.

PMID:
10729904
20.

Isolation of novel ribozymes that ligate AMP-activated RNA substrates.

Hager AJ, Szostak JW.

Chem Biol. 1997 Aug;4(8):607-17.

Supplemental Content

Support Center