Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 79

1.

New methods for finding common insertion sites and co-occurring common insertion sites in transposon- and virus-based genetic screens.

Bergemann TL, Starr TK, Yu H, Steinbach M, Erdmann J, Chen Y, Cormier RT, Largaespada DA, Silverstein KA.

Nucleic Acids Res. 2012 May;40(9):3822-33. doi: 10.1093/nar/gkr1295. Epub 2012 Jan 12.

2.

Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screens.

de Ridder J, Uren A, Kool J, Reinders M, Wessels L.

PLoS Comput Biol. 2006 Dec 8;2(12):e166. Epub 2006 Oct 24.

3.

Clonal expansion analysis of transposon insertions by high-throughput sequencing identifies candidate cancer genes in a PiggyBac mutagenesis screen.

Friedel RH, Friedel CC, Bonfert T, Shi R, Rad R, Soriano P.

PLoS One. 2013 Aug 5;8(8):e72338. doi: 10.1371/journal.pone.0072338. Print 2013.

4.

TAPDANCE: an automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data.

Sarver AL, Erdman J, Starr T, Largaespada DA, Silverstein KA.

BMC Bioinformatics. 2012 Jun 29;13:154. doi: 10.1186/1471-2105-13-154.

5.

Retroviral insertional mutagenesis: past, present and future.

Uren AG, Kool J, Berns A, van Lohuizen M.

Oncogene. 2005 Nov 21;24(52):7656-72. Review.

PMID:
16299527
6.

Determining common insertion sites based on retroviral insertion distribution across tumors.

Chen F, Li Z, Chen YP.

Comput Biol Chem. 2014 Aug;51:83-92. doi: 10.1016/j.compbiolchem.2014.03.001. Epub 2014 Mar 12.

PMID:
24675070
7.

Sequencing methods and datasets to improve functional interpretation of sleeping beauty mutagenesis screens.

Riordan JD, Drury LJ, Smith RP, Brett BT, Rogers LM, Scheetz TE, Dupuy AJ.

BMC Genomics. 2014 Dec 19;15:1150. doi: 10.1186/1471-2164-15-1150.

8.

Retroviral insertions in the VISION database identify molecular pathways in mouse lymphoid leukemia and lymphoma.

Weiser KC, Liu B, Hansen GM, Skapura D, Hentges KE, Yarlagadda S, Morse Iii HC, Justice MJ.

Mamm Genome. 2007 Oct;18(10):709-22. Epub 2007 Oct 10.

9.

High-throughput semiquantitative analysis of insertional mutations in heterogeneous tumors.

Koudijs MJ, Klijn C, van der Weyden L, Kool J, ten Hoeve J, Sie D, Prasetyanti PR, Schut E, Kas S, Whipp T, Cuppen E, Wessels L, Adams DJ, Jonkers J.

Genome Res. 2011 Dec;21(12):2181-9. doi: 10.1101/gr.112763.110. Epub 2011 Aug 18.

10.

Insertional mutagenesis identifies multiple networks of cooperating genes driving intestinal tumorigenesis.

March HN, Rust AG, Wright NA, ten Hoeve J, de Ridder J, Eldridge M, van der Weyden L, Berns A, Gadiot J, Uren A, Kemp R, Arends MJ, Wessels LF, Winton DJ, Adams DJ.

Nat Genet. 2011 Nov 6;43(12):1202-9. doi: 10.1038/ng.990.

11.

Transposon insertional mutagenesis models of cancer.

Mann KM, Jenkins NA, Copeland NG, Mann MB.

Cold Spring Harb Protoc. 2014 Mar 1;2014(3):235-47. doi: 10.1101/pdb.top069849.

PMID:
24591685
12.

Computational identification of insertional mutagenesis targets for cancer gene discovery.

de Jong J, de Ridder J, van der Weyden L, Sun N, van Uitert M, Berns A, van Lohuizen M, Jonkers J, Adams DJ, Wessels LF.

Nucleic Acids Res. 2011 Aug;39(15):e105. doi: 10.1093/nar/gkr447. Epub 2011 Jun 7.

13.

RTCGD: retroviral tagged cancer gene database.

Akagi K, Suzuki T, Stephens RM, Jenkins NA, Copeland NG.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D523-7.

14.

Sleeping Beauty transposon insertional mutagenesis based mouse models for cancer gene discovery.

Moriarity BS, Largaespada DA.

Curr Opin Genet Dev. 2015 Feb;30:66-72. doi: 10.1016/j.gde.2015.04.007. Epub 2015 Jun 4. Review.

15.

Chromatin landscapes of retroviral and transposon integration profiles.

de Jong J, Akhtar W, Badhai J, Rust AG, Rad R, Hilkens J, Berns A, van Lohuizen M, Wessels LF, de Ridder J.

PLoS Genet. 2014 Apr 10;10(4):e1004250. doi: 10.1371/journal.pgen.1004250. eCollection 2014 Apr.

16.

Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse.

Collier LS, Carlson CM, Ravimohan S, Dupuy AJ, Largaespada DA.

Nature. 2005 Jul 14;436(7048):272-6.

18.

Cancer gene discovery: exploiting insertional mutagenesis.

Ranzani M, Annunziato S, Adams DJ, Montini E.

Mol Cancer Res. 2013 Oct;11(10):1141-58. doi: 10.1158/1541-7786.MCR-13-0244. Epub 2013 Aug 8. Review.

19.

Identifying transposon insertions and their effects from RNA-sequencing data.

de Ruiter JR, Kas SM, Schut E, Adams DJ, Koudijs MJ, Wessels LFA, Jonkers J.

Nucleic Acids Res. 2017 Jul 7;45(12):7064-7077. doi: 10.1093/nar/gkx461.

20.

RNA sequencing of Sleeping Beauty transposon-induced tumors detects transposon-RNA fusions in forward genetic cancer screens.

Temiz NA, Moriarity BS, Wolf NK, Riordan JD, Dupuy AJ, Largaespada DA, Sarver AL.

Genome Res. 2016 Jan;26(1):119-29. doi: 10.1101/gr.188649.114. Epub 2015 Nov 9.

Supplemental Content

Support Center