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Items: 1 to 20 of 248

1.

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.

Shiroguchi K, Jia TZ, Sims PA, Xie XS.

Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1347-52. doi: 10.1073/pnas.1118018109. Epub 2012 Jan 9.

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3.

Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.

Sengupta S, Bolin JM, Ruotti V, Nguyen BK, Thomson JA, Elwell AL, Stewart R.

J Vis Exp. 2011 Oct 27;(56):e3340. doi: 10.3791/3340.

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Biases in small RNA deep sequencing data.

Raabe CA, Tang TH, Brosius J, Rozhdestvensky TS.

Nucleic Acids Res. 2014 Feb;42(3):1414-26. doi: 10.1093/nar/gkt1021. Epub 2013 Nov 5. Review.

6.

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3.

PMID:
21431761
7.

Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.

Zhou S, Jones C, Mieczkowski P, Swanstrom R.

J Virol. 2015 Aug;89(16):8540-55. doi: 10.1128/JVI.00522-15. Epub 2015 Jun 3.

8.

Methods for small RNA preparation for digital gene expression profiling by next-generation sequencing.

Linsen SE, Cuppen E.

Methods Mol Biol. 2012;822:205-17. doi: 10.1007/978-1-61779-427-8_14.

PMID:
22144201
9.

Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing.

Zhang R, Li X, Ramaswami G, Smith KS, Turecki G, Montgomery SB, Li JB.

Nat Methods. 2014 Jan;11(1):51-4. doi: 10.1038/nmeth.2736. Epub 2013 Nov 24.

10.

Quantitative single-cell RNA-seq with unique molecular identifiers.

Islam S, Zeisel A, Joost S, La Manno G, Zajac P, Kasper M, Lönnerberg P, Linnarsson S.

Nat Methods. 2014 Feb;11(2):163-6. doi: 10.1038/nmeth.2772. Epub 2013 Dec 22.

PMID:
24363023
11.

Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.

Tang DT, Plessy C, Salimullah M, Suzuki AM, Calligaris R, Gustincich S, Carninci P.

Nucleic Acids Res. 2013 Feb 1;41(3):e44. doi: 10.1093/nar/gks1128. Epub 2012 Nov 24.

12.

Next-generation sequencing applied to flower development: RNA-seq.

He J, Jiao Y.

Methods Mol Biol. 2014;1110:401-11. doi: 10.1007/978-1-4614-9408-9_23.

PMID:
24395272
13.

Reducing amplification artifacts in high multiplex amplicon sequencing by using molecular barcodes.

Peng Q, Vijaya Satya R, Lewis M, Randad P, Wang Y.

BMC Genomics. 2015 Aug 7;16:589. doi: 10.1186/s12864-015-1806-8.

14.

Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens.

Shokralla S, Gibson JF, Nikbakht H, Janzen DH, Hallwachs W, Hajibabaei M.

Mol Ecol Resour. 2014 Sep;14(5):892-901. doi: 10.1111/1755-0998.12236. Epub 2014 Feb 19.

15.

RNA-Seq: revelation of the messengers.

Van Verk MC, Hickman R, Pieterse CM, Van Wees SC.

Trends Plant Sci. 2013 Apr;18(4):175-9. doi: 10.1016/j.tplants.2013.02.001. Epub 2013 Mar 5.

PMID:
23481128
16.

Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.

Brooks MJ, Rajasimha HK, Roger JE, Swaroop A.

Mol Vis. 2011;17:3034-54. Epub 2011 Nov 23.

17.

Transcriptomic analysis of Staphylococcus aureus using microarray and advanced next-generation RNA-seq technologies.

Lei T, Becker A, Ji Y.

Methods Mol Biol. 2014;1085:213-29. doi: 10.1007/978-1-62703-664-1_13.

PMID:
24085699
18.

Quality control of RNA-seq experiments.

Li X, Nair A, Wang S, Wang L.

Methods Mol Biol. 2015;1269:137-46. doi: 10.1007/978-1-4939-2291-8_8.

PMID:
25577376
19.

Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing.

Van Nieuwerburgh F, Soetaert S, Podshivalova K, Ay-Lin Wang E, Schaffer L, Deforce D, Salomon DR, Head SR, Ordoukhanian P.

PLoS One. 2011;6(10):e26969. doi: 10.1371/journal.pone.0026969. Epub 2011 Oct 28.

20.

Peregrine: A rapid and unbiased method to produce strand-specific RNA-Seq libraries from small quantities of starting material.

Langevin SA, Bent ZW, Solberg OD, Curtis DJ, Lane PD, Williams KP, Schoeniger JS, Sinha A, Lane TW, Branda SS.

RNA Biol. 2013 Apr;10(4):502-15. doi: 10.4161/rna.24284. Epub 2013 Apr 1.

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