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Items: 1 to 20 of 118

1.

Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the paleopolyploid soybean.

Du J, Tian Z, Sui Y, Zhao M, Song Q, Cannon SB, Cregan P, Ma J.

Plant Cell. 2012 Jan;24(1):21-32. doi: 10.1105/tpc.111.092759.

2.

Divergence in Enzymatic Activities in the Soybean GST Supergene Family Provides New Insight into the Evolutionary Dynamics of Whole-Genome Duplicates.

Liu HJ, Tang ZX, Han XM, Yang ZL, Zhang FM, Yang HL, Liu YJ, Zeng QY.

Mol Biol Evol. 2015 Nov;32(11):2844-59. doi: 10.1093/molbev/msv156.

3.

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.

Schlueter JA, Lin JY, Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, O'Bleness M, Roe BA, Nelson RT, Scheffler BE, Jackson SA, Shoemaker RC.

BMC Genomics. 2007 Sep 19;8:330.

4.

The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula.

Shin JH, Van K, Kim DH, Kim KD, Jang YE, Choi BS, Kim MY, Lee SH.

BMC Plant Biol. 2008 Dec 23;8:133. doi: 10.1186/1471-2229-8-133.

5.

Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, Ilut D, Jackson S, Lai H, Mammadov J, Del Campo SM, Metcalf M, Nguyen A, O'Bleness M, Pfeil BE, Podicheti R, Ratnaparkhe MB, Samain S, Sanders I, Ségurens B, Sévignac M, Sherman-Broyles S, Thareau V, Tucker DM, Walling J, Wawrzynski A, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MA, Young ND.

Plant Physiol. 2008 Dec;148(4):1740-59. doi: 10.1104/pp.108.127902.

6.

Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis.

Zhang PG, Huang SZ, Pin AL, Adams KL.

Mol Biol Evol. 2010 Jul;27(7):1686-97. doi: 10.1093/molbev/msq054.

7.
8.

Dynamic rearrangements determine genome organization and useful traits in soybean.

Kim KD, Shin JH, Van K, Kim DH, Lee SH.

Plant Physiol. 2009 Nov;151(3):1066-76. doi: 10.1104/pp.109.141739.

9.
10.

Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants.

Jiang WK, Liu YL, Xia EH, Gao LZ.

Plant Physiol. 2013 Apr;161(4):1844-61. doi: 10.1104/pp.112.200147.

11.

Expression pattern divergence of duplicated genes in rice.

Li Z, Zhang H, Ge S, Gu X, Gao G, Luo J.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S8. doi: 10.1186/1471-2105-10-S6-S8.

12.

Concerted evolution of D1 and D2 to regulate chlorophyll degradation in soybean.

Fang C, Li C, Li W, Wang Z, Zhou Z, Shen Y, Wu M, Wu Y, Li G, Kong LA, Liu C, Jackson SA, Tian Z.

Plant J. 2014 Mar;77(5):700-12. doi: 10.1111/tpj.12419.

13.

Divergence in expression between duplicated genes in Arabidopsis.

Ganko EW, Meyers BC, Vision TJ.

Mol Biol Evol. 2007 Oct;24(10):2298-309.

14.

Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome.

Zhou Z, Wang Z, Li W, Fang C, Shen Y, Li C, Wu Y, Tian Z.

Plant J. 2013 Oct;76(2):332-44. doi: 10.1111/tpj.12293.

15.

Genome sequence of the palaeopolyploid soybean.

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA.

Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Erratum in: Nature. 2010 May 6;465(7294):120.

PMID:
20075913
16.
17.

Comparative genomic and transcriptomic analysis of tandemly and segmentally duplicated genes in rice.

Jiang SY, González JM, Ramachandran S.

PLoS One. 2013 May 16;8(5):e63551. doi: 10.1371/journal.pone.0063551.

18.
19.

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

Flagel LE, Wendel JF.

New Phytol. 2010 Apr;186(1):184-93. doi: 10.1111/j.1469-8137.2009.03107.x.

20.

Factors that contribute to variation in evolutionary rate among Arabidopsis genes.

Yang L, Gaut BS.

Mol Biol Evol. 2011 Aug;28(8):2359-69. doi: 10.1093/molbev/msr058.

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