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Chromosome visualization tool: a whole genome viewer.

Cannon EK, Cannon SB.

Int J Plant Genomics. 2011;2011:373875. doi: 10.1155/2011/373875. Epub 2011 Dec 19.


DensityMap: a genome viewer for illustrating the densities of features.

Guizard S, Piégu B, Bigot Y.

BMC Bioinformatics. 2016 May 6;17(1):204. doi: 10.1186/s12859-016-1055-0.


Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

BMC Bioinformatics. 2005 Apr 12;6:95.


SeeGH--a software tool for visualization of whole genome array comparative genomic hybridization data.

Chi B, DeLeeuw RJ, Coe BP, MacAulay C, Lam WL.

BMC Bioinformatics. 2004 Feb 9;5:13.


Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism.

Baxter SW, Davey JW, Johnston JS, Shelton AM, Heckel DG, Jiggins CD, Blaxter ML.

PLoS One. 2011 Apr 26;6(4):e19315. doi: 10.1371/journal.pone.0019315.


A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts.

Guyomard R, Boussaha M, Krieg F, Hervet C, Quillet E.

BMC Genet. 2012 Mar 16;13:15. doi: 10.1186/1471-2156-13-15.


Comparative map and trait viewer (CMTV): an integrated bioinformatic tool to construct consensus maps and compare QTL and functional genomics data across genomes and experiments.

Sawkins MC, Farmer AD, Hoisington D, Sullivan J, Tolopko A, Jiang Z, Ribaut JM.

Plant Mol Biol. 2004 Oct;56(3):465-80.


Development of pachytene FISH maps for six maize chromosomes and their integration with other maize maps for insights into genome structure variation.

Figueroa DM, Bass HW.

Chromosome Res. 2012 May;20(4):363-80. doi: 10.1007/s10577-012-9281-4. Epub 2012 May 16.


High resolution genetic mapping by genome sequencing reveals genome duplication and tetraploid genetic structure of the diploid Miscanthus sinensis.

Ma XF, Jensen E, Alexandrov N, Troukhan M, Zhang L, Thomas-Jones S, Farrar K, Clifton-Brown J, Donnison I, Swaller T, Flavell R.

PLoS One. 2012;7(3):e33821. doi: 10.1371/journal.pone.0033821. Epub 2012 Mar 16.


A shot in the genome: how accurately do shotgun 454 sequences represent a genome?

Meglécz E, Pech N, Gilles A, Martin JF, Gardner MG.

BMC Res Notes. 2012 May 28;5:259.


JunctionViewer: customizable annotation software for repeat-rich genomic regions.

Wolfgruber TK, Presting GG.

BMC Bioinformatics. 2010 Jan 12;11:23. doi: 10.1186/1471-2105-11-23.


Integration of cytogenetic and genetic linkage maps unveils the physical architecture of tomato chromosome 2.

Koo DH, Jo SH, Bang JW, Park HM, Lee S, Choi D.

Genetics. 2008 Jul;179(3):1211-20. doi: 10.1534/genetics.108.089532. Epub 2008 Jul 13.


Genome size, karyotype polymorphism and chromosomal evolution in Trypanosoma cruzi.

Souza RT, Lima FM, Barros RM, Cortez DR, Santos MF, Cordero EM, Ruiz JC, Goldenberg S, Teixeira MM, da Silveira JF.

PLoS One. 2011;6(8):e23042. doi: 10.1371/journal.pone.0023042. Epub 2011 Aug 12.


A comparative map viewer integrating genetic maps for Brassica and Arabidopsis.

Lim GA, Jewell EG, Li X, Erwin TA, Love C, Batley J, Spangenberg G, Edwards D.

BMC Plant Biol. 2007 Jul 24;7:40.


Gene order and recombination rate in homologous chromosome regions of the chicken and a passerine bird.

Dawson DA, Akesson M, Burke T, Pemberton JM, Slate J, Hansson B.

Mol Biol Evol. 2007 Jul;24(7):1537-52. Epub 2007 Apr 13.


Linkage maps of human chromosomes.

White R, Lalouel JM, Leppert M, Lathrop M, Nakamura Y, O'Connell P.

Genome. 1989;31(2):1066-72. Review.


High-throughput physical mapping of chromosomes using automated in situ hybridization.

George P, Sharakhova MV, Sharakhov IV.

J Vis Exp. 2012 Jun 28;(64). pii: 4007. doi: 10.3791/4007.


SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes.

Drillon G, Carbone A, Fischer G.

PLoS One. 2014 Mar 20;9(3):e92621. doi: 10.1371/journal.pone.0092621. eCollection 2014.


Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss).

Phillips RB, Keatley KA, Morasch MR, Ventura AB, Lubieniecki KP, Koop BF, Danzmann RG, Davidson WS.

BMC Genet. 2009 Aug 18;10:46. doi: 10.1186/1471-2156-10-46.

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