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Items: 1 to 20 of 54


An integer linear programming approach for finding deregulated subgraphs in regulatory networks.

Backes C, Rurainski A, Klau GW, Müller O, Stöckel D, Gerasch A, Küntzer J, Maisel D, Ludwig N, Hein M, Keller A, Burtscher H, Kaufmann M, Meese E, Lenhof HP.

Nucleic Acids Res. 2012 Mar;40(6):e43. doi: 10.1093/nar/gkr1227. Epub 2011 Dec 30.


NetworkTrail--a web service for identifying and visualizing deregulated subnetworks.

Stöckel D, Müller O, Kehl T, Gerasch A, Backes C, Rurainski A, Keller A, Kaufmann M, Lenhof HP.

Bioinformatics. 2013 Jul 1;29(13):1702-3. doi: 10.1093/bioinformatics/btt204. Epub 2013 Apr 26.


Identification of colorectal cancer related genes with mRMR and shortest path in protein-protein interaction network.

Li BQ, Huang T, Liu L, Cai YD, Chou KC.

PLoS One. 2012;7(4):e33393. doi: 10.1371/journal.pone.0033393. Epub 2012 Apr 4.


Activation of BTAK expression in primary ovarian surface epithelial cells of prophylactic ovaries.

Zhang Z, Singh M, Davidson S, Rosen DG, Yang G, Liu J.

Mod Pathol. 2007 Oct;20(10):1078-84. Epub 2007 Aug 3.


Look who's talking: deregulated signaling in colorectal cancer.

Abba M, Laufs S, Aghajany M, Korn B, Benner A, Allgayer H.

Cancer Genomics Proteomics. 2012 Jan;9(1):15-25.


BRCA1 transcriptionally regulates genes involved in breast tumorigenesis.

Welcsh PL, Lee MK, Gonzalez-Hernandez RM, Black DJ, Mahadevappa M, Swisher EM, Warrington JA, King MC.

Proc Natl Acad Sci U S A. 2002 May 28;99(11):7560-5.


Proteome changes in ovarian epithelial cells derived from women with BRCA1 mutations and family histories of cancer.

Smith-Beckerman DM, Fung KW, Williams KE, Auersperg N, Godwin AK, Burlingame AL.

Mol Cell Proteomics. 2005 Feb;4(2):156-68. Epub 2004 Dec 9.


Activated networking of platelet activating factor receptor and FAK/STAT1 induces malignant potential in BRCA1-mutant at-risk ovarian epithelium.

Zhang L, Wang D, Jiang W, Edwards D, Qiu W, Barroilhet LM, Rho JH, Jin L, Seethappan V, Vitonis A, Wang J, Mok SC, Crum C, Cramer DW, Ye B.

Reprod Biol Endocrinol. 2010 Jun 24;8:74. doi: 10.1186/1477-7827-8-74.


Uncovering signal transduction networks from high-throughput data by integer linear programming.

Zhao XM, Wang RS, Chen L, Aihara K.

Nucleic Acids Res. 2008 May;36(9):e48. doi: 10.1093/nar/gkn145. Epub 2008 Apr 13.


A network-based analysis of traditional Chinese medicine cold and hot patterns in rheumatoid arthritis.

Chen G, Lu C, Zha Q, Xiao C, Xu S, Ju D, Zhou Y, Jia W, Lu A.

Complement Ther Med. 2012 Feb-Apr;20(1-2):23-30. doi: 10.1016/j.ctim.2011.10.005. Epub 2011 Nov 3.


c-Kit is required for growth and survival of the cells of origin of Brca1-mutation-associated breast cancer.

Regan JL, Kendrick H, Magnay FA, Vafaizadeh V, Groner B, Smalley MJ.

Oncogene. 2012 Feb 16;31(7):869-83. doi: 10.1038/onc.2011.289. Epub 2011 Jul 18.


Integer programming-based method for completing signaling pathways and its application to analysis of colorectal cancer.

Tamura T, Yamanishi Y, Tanabe M, Goto S, Kanehisa M, Horimoto K, Akutsu T.

Genome Inform. 2010;24:193-203.


Identification of abrogated pathways in fallopian tube epithelium from BRCA1 mutation carriers.

George SH, Greenaway J, Milea A, Clary V, Shaw S, Sharma M, Virtanen C, Shaw PA.

J Pathol. 2011 Sep;225(1):106-17. doi: 10.1002/path.2927. Epub 2011 Jul 8.


Expression of BRCA1, NBR1 and NBR2 genes in human breast cancer cells.

Dimitrov SD, Matousková E, Forejt J.

Folia Biol (Praha). 2001;47(4):120-7.


Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines.

Ha KC, Lalonde E, Li L, Cavallone L, Natrajan R, Lambros MB, Mitsopoulos C, Hakas J, Kozarewa I, Fenwick K, Lord CJ, Ashworth A, Vincent-Salomon A, Basik M, Reis-Filho JS, Majewski J, Foulkes WD.

BMC Med Genomics. 2011 Oct 27;4:75. doi: 10.1186/1755-8794-4-75.


Gene pathways and subnetworks distinguish between major glioma subtypes and elucidate potential underlying biology.

Wuchty S, Zhang A, Walling J, Ahn S, Li A, Quezado M, Oberholtzer C, Zenklusen JC, Fine HA.

J Biomed Inform. 2010 Dec;43(6):945-52. doi: 10.1016/j.jbi.2010.08.011. Epub 2010 Sep 7.


BRCA1 expression is induced before DNA synthesis in both normal and tumor-derived breast cells.

Vaughn JP, Davis PL, Jarboe MD, Huper G, Evans AC, Wiseman RW, Berchuck A, Iglehart JD, Futreal PA, Marks JR.

Cell Growth Differ. 1996 Jun;7(6):711-5.


[Transcriptomic regulation and molecular mechanism of polygenic tumor at different stages].

Li X, Shen S, Wu M, Li X, Xiong W, Lu J, Zhou M, Ma J, Xiang J, Zeng Z, Xiang B, Zhou Y, Xiao L, Zhou H, Fan S, Li G.

Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2011 Jul;36(7):585-91. doi: 10.3969/j.issn.1672-7347.2011.07.001. Review. Chinese.

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