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Items: 1 to 20 of 96

1.

Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity.

Mintz-Oron S, Meir S, Malitsky S, Ruppin E, Aharoni A, Shlomi T.

Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):339-44. doi: 10.1073/pnas.1100358109. Epub 2011 Dec 19.

2.

Reconstruction of Danio rerio metabolic model accounting for subcellular compartmentalisation.

Bekaert M.

PLoS One. 2012;7(11):e49903. doi: 10.1371/journal.pone.0049903. Epub 2012 Nov 14.

3.

Plant genome-scale metabolic reconstruction and modelling.

de Oliveira Dal'Molin CG, Nielsen LK.

Curr Opin Biotechnol. 2013 Apr;24(2):271-7. doi: 10.1016/j.copbio.2012.08.007. Epub 2012 Sep 1. Review.

PMID:
22947602
4.

AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis.

de Oliveira Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK.

Plant Physiol. 2010 Feb;152(2):579-89. doi: 10.1104/pp.109.148817. Epub 2009 Dec 31.

5.

A topological map of the compartmentalized Arabidopsis thaliana leaf metabolome.

Krueger S, Giavalisco P, Krall L, Steinhauser MC, Büssis D, Usadel B, Flügge UI, Fernie AR, Willmitzer L, Steinhauser D.

PLoS One. 2011 Mar 15;6(3):e17806. doi: 10.1371/journal.pone.0017806.

6.

Zea mays iRS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism.

Saha R, Suthers PF, Maranas CD.

PLoS One. 2011;6(7):e21784. doi: 10.1371/journal.pone.0021784. Epub 2011 Jul 6.

7.

A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.

Sigurdsson MI, Jamshidi N, Steingrimsson E, Thiele I, Palsson BØ.

BMC Syst Biol. 2010 Oct 19;4:140. doi: 10.1186/1752-0509-4-140.

8.

A workflow for mathematical modeling of subcellular metabolic pathways in leaf metabolism of Arabidopsis thaliana.

Nägele T, Weckwerth W.

Front Plant Sci. 2013 Dec 24;4:541. doi: 10.3389/fpls.2013.00541. eCollection 2013 Dec 24.

9.

The challenges of cellular compartmentalization in plant metabolic engineering.

Heinig U, Gutensohn M, Dudareva N, Aharoni A.

Curr Opin Biotechnol. 2013 Apr;24(2):239-46. doi: 10.1016/j.copbio.2012.11.006. Epub 2012 Dec 12. Review.

PMID:
23246154
10.

AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome.

Dal'Molin CG, Quek LE, Palfreyman RW, Nielsen LK.

BMC Genomics. 2011 Dec 22;12 Suppl 4:S5. doi: 10.1186/1471-2164-12-S4-S5. Epub 2011 Dec 22.

11.

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks.

Radrich K, Tsuruoka Y, Dobson P, Gevorgyan A, Swainston N, Baart G, Schwartz JM.

BMC Syst Biol. 2010 Aug 16;4:114. doi: 10.1186/1752-0509-4-114.

12.

A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions.

Cheung CY, Williams TC, Poolman MG, Fell DA, Ratcliffe RG, Sweetlove LJ.

Plant J. 2013 Sep;75(6):1050-61. doi: 10.1111/tpj.12252. Epub 2013 Aug 6.

13.

Genome-scale metabolic models: reconstruction and analysis.

Baart GJ, Martens DE.

Methods Mol Biol. 2012;799:107-26. doi: 10.1007/978-1-61779-346-2_7.

PMID:
21993642
14.

A genome-scale metabolic model accurately predicts fluxes in central carbon metabolism under stress conditions.

Williams TC, Poolman MG, Howden AJ, Schwarzlander M, Fell DA, Ratcliffe RG, Sweetlove LJ.

Plant Physiol. 2010 Sep;154(1):311-23. doi: 10.1104/pp.110.158535. Epub 2010 Jul 6.

15.

Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network.

Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY.

Plant Physiol. 2015 Apr;167(4):1685-98. doi: 10.1104/pp.114.252361. Epub 2015 Feb 10.

16.

Variation of herbivore-induced volatile terpenes among Arabidopsis ecotypes depends on allelic differences and subcellular targeting of two terpene synthases, TPS02 and TPS03.

Huang M, Abel C, Sohrabi R, Petri J, Haupt I, Cosimano J, Gershenzon J, Tholl D.

Plant Physiol. 2010 Jul;153(3):1293-310. doi: 10.1104/pp.110.154864. Epub 2010 May 12.

17.

Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis.

Hay JO, Shi H, Heinzel N, Hebbelmann I, Rolletschek H, Schwender J.

Front Plant Sci. 2014 Dec 19;5:724. doi: 10.3389/fpls.2014.00724. eCollection 2014 Dec 19.

18.

A genome-scale metabolic model of Arabidopsis and some of its properties.

Poolman MG, Miguet L, Sweetlove LJ, Fell DA.

Plant Physiol. 2009 Nov;151(3):1570-81. doi: 10.1104/pp.109.141267. Epub 2009 Sep 15.

19.

Compartmentation in plant metabolism.

Lunn JE.

J Exp Bot. 2007;58(1):35-47. Epub 2006 Oct 9. Review.

PMID:
17030538
20.

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