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Items: 1 to 20 of 101

1.

Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy.

Young JW, Locke JC, Altinok A, Rosenfeld N, Bacarian T, Swain PS, Mjolsness E, Elowitz MB.

Nat Protoc. 2011 Dec 15;7(1):80-8. doi: 10.1038/nprot.2011.432.

2.

Single-cell analysis of mycobacteria using microfluidics and time-lapse microscopy.

Dhar N, Manina G.

Methods Mol Biol. 2015;1285:241-56. doi: 10.1007/978-1-4939-2450-9_14.

PMID:
25779320
3.
4.

TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies.

Klein J, Leupold S, Biegler I, Biedendieck R, Münch R, Jahn D.

Bioinformatics. 2012 Sep 1;28(17):2276-7. doi: 10.1093/bioinformatics/bts424. Epub 2012 Jul 5.

PMID:
22772947
5.

Use of fluorescence microscopy to analyze genetic circuit dynamics.

Süel G.

Methods Enzymol. 2011;497:275-93. doi: 10.1016/B978-0-12-385075-1.00013-5.

PMID:
21601092
6.

Live-cell imaging tool optimization to study gene expression levels and dynamics in single cells of Bacillus cereus.

Eijlander RT, Kuipers OP.

Appl Environ Microbiol. 2013 Sep;79(18):5643-51. doi: 10.1128/AEM.01347-13. Epub 2013 Jul 12.

7.

Live Cell Imaging of Bacillus subtilis and Streptococcus pneumoniae using Automated Time-lapse Microscopy.

de Jong IG, Beilharz K, Kuipers OP, Veening JW.

J Vis Exp. 2011 Jul 28;(53). pii: 3145. doi: 10.3791/3145.

8.

Circuit-level input integration in bacterial gene regulation.

Espinar L, Dies M, Cagatay T, Süel GM, Garcia-Ojalvo J.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):7091-6. doi: 10.1073/pnas.1216091110. Epub 2013 Apr 9.

9.

Image segmentation and dynamic lineage analysis in single-cell fluorescence microscopy.

Wang Q, Niemi J, Tan CM, You L, West M.

Cytometry A. 2010 Jan;77(1):101-10. doi: 10.1002/cyto.a.20812.

10.

BactImAS: a platform for processing and analysis of bacterial time-lapse microscopy movies.

Mekterović I, Mekterović D, Maglica Z.

BMC Bioinformatics. 2014 Jul 25;15:251. doi: 10.1186/1471-2105-15-251.

11.

Measuring bacterial adaptation dynamics at the single-cell level using a microfluidic chemostat and time-lapse fluorescence microscopy.

Long Z, Olliver A, Brambilla E, Sclavi B, Lagomarsino MC, Dorfman KD.

Analyst. 2014 Oct 21;139(20):5254-62. doi: 10.1039/c4an00877d. Epub 2014 Aug 19.

PMID:
25137302
12.

Strain Library Imaging Protocol for high-throughput, automated single-cell microscopy of large bacterial collections arrayed on multiwell plates.

Shi H, Colavin A, Lee TK, Huang KC.

Nat Protoc. 2017 Feb;12(2):429-438. doi: 10.1038/nprot.2016.181. Epub 2017 Jan 26.

PMID:
28125106
14.

CAST: An automated segmentation and tracking tool for the analysis of transcriptional kinetics from single-cell time-lapse recordings.

Blanchoud S, Nicolas D, Zoller B, Tidin O, Naef F.

Methods. 2015 Sep 1;85:3-11. doi: 10.1016/j.ymeth.2015.04.023. Epub 2015 Apr 28.

PMID:
25934263
15.

TRACMIT: An effective pipeline for tracking and analyzing cells on micropatterns through mitosis.

Burri O, Wolf B, Seitz A, Gönczy P.

PLoS One. 2017 Jul 26;12(7):e0179752. doi: 10.1371/journal.pone.0179752. eCollection 2017.

16.

Unsupervised modeling of cell morphology dynamics for time-lapse microscopy.

Zhong Q, Busetto AG, Fededa JP, Buhmann JM, Gerlich DW.

Nat Methods. 2012 May 27;9(7):711-3. doi: 10.1038/nmeth.2046.

PMID:
22635062
17.

Using movies to analyse gene circuit dynamics in single cells.

Locke JC, Elowitz MB.

Nat Rev Microbiol. 2009 May;7(5):383-92. doi: 10.1038/nrmicro2056. Review.

18.

A time-series method for automated measurement of changes in mitotic and interphase duration from time-lapse movies.

Sigoillot FD, Huckins JF, Li F, Zhou X, Wong ST, King RW.

PLoS One. 2011;6(9):e25511. doi: 10.1371/journal.pone.0025511. Epub 2011 Sep 26.

19.

Background intensity correction for terabyte-sized time-lapse images.

Chalfoun J, Majurski M, Bhadriraju K, Lund S, Bajcsy P, Brady M.

J Microsc. 2015 Mar;257(3):226-37. doi: 10.1111/jmi.12205. Epub 2014 Dec 30.

PMID:
25623496
20.

Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci.

Dzyubachyk O, Essers J, van Cappellen WA, Baldeyron C, Inagaki A, Niessen WJ, Meijering E.

Bioinformatics. 2010 Oct 1;26(19):2424-30. doi: 10.1093/bioinformatics/btq434. Epub 2010 Aug 11.

PMID:
20702399

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