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Items: 1 to 20 of 93

1.

A new method for alignment of LC-MALDI-TOF data.

Tang Z, Zhang L, Cheema AK, Ressom HW.

Proteome Sci. 2011 Oct 14;9 Suppl 1:S10. doi: 10.1186/1477-5956-9-S1-S10.

2.

LC-MS data analysis for differential protein expression detection.

Varghese RS, Ressom HW.

Methods Mol Biol. 2011;694:139-50. doi: 10.1007/978-1-60761-977-2_10.

PMID:
21082433
3.

A new strategy for faster urinary biomarkers identification by Nano-LC-MALDI-TOF/TOF mass spectrometry.

Benkali K, Marquet P, Rérolle J, Le Meur Y, Gastinel L.

BMC Genomics. 2008 Nov 14;9:541. doi: 10.1186/1471-2164-9-541.

4.

Internal calibrants allow high accuracy peptide matching between MALDI imaging MS and LC-MS/MS.

Gustafsson JO, Eddes JS, Meding S, Koudelka T, Oehler MK, McColl SR, Hoffmann P.

J Proteomics. 2012 Aug 30;75(16):5093-105. doi: 10.1016/j.jprot.2012.04.054. Epub 2012 May 23.

PMID:
22634080
5.

Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets.

Wang J, Lam H.

Bioinformatics. 2013 Oct 1;29(19):2469-76. doi: 10.1093/bioinformatics/btt435. Epub 2013 Jul 30.

PMID:
23904508
6.

MassUntangler: a novel alignment tool for label-free liquid chromatography-mass spectrometry proteomic data.

Ballardini R, Benevento M, Arrigoni G, Pattini L, Roda A.

J Chromatogr A. 2011 Dec 9;1218(49):8859-68. doi: 10.1016/j.chroma.2011.06.062. Epub 2011 Jun 22.

PMID:
21783198
7.

Shape-based feature matching improves protein identification via LC-MS and tandem MS.

Noy K, Towfic F, Wittenberg GM, Fasulo D.

J Comput Biol. 2011 Apr;18(4):547-57. doi: 10.1089/cmb.2010.0155. Epub 2011 Mar 21.

PMID:
21417940
8.

LC-MALDI-TOF/TOF for shotgun proteomics.

Fernández-Puente P, Mateos J, Blanco FJ, Ruiz-Romero C.

Methods Mol Biol. 2014;1156:27-38. doi: 10.1007/978-1-4939-0685-7_2.

PMID:
24791979
9.
10.

Time alignment algorithms based on selected mass traces for complex LC-MS data.

Christin C, Hoefsloot HC, Smilde AK, Suits F, Bischoff R, Horvatovich PL.

J Proteome Res. 2010 Mar 5;9(3):1483-95. doi: 10.1021/pr9010124.

PMID:
20070124
11.

Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline.

Jaitly N, Monroe ME, Petyuk VA, Clauss TR, Adkins JN, Smith RD.

Anal Chem. 2006 Nov 1;78(21):7397-409.

PMID:
17073405
12.

Coumarin tags for analysis of peptides by MALDI-TOF MS and MS/MS. 2. Alexa Fluor 350 tag for increased peptide and protein Identification by LC-MALDI-TOF/TOF MS.

Pashkova A, Chen HS, Rejtar T, Zang X, Giese R, Andreev V, Moskovets E, Karger BL.

Anal Chem. 2005 Apr 1;77(7):2085-96.

PMID:
15801742
13.

Retention time alignment algorithms for LC/MS data must consider non-linear shifts.

Podwojski K, Fritsch A, Chamrad DC, Paul W, Sitek B, Stühler K, Mutzel P, Stephan C, Meyer HE, Urfer W, Ickstadt K, Rahnenführer J.

Bioinformatics. 2009 Mar 15;25(6):758-64. doi: 10.1093/bioinformatics/btp052. Epub 2009 Jan 28.

PMID:
19176558
14.

A comparison of MS/MS-based, stable-isotope-labeled, quantitation performance on ESI-quadrupole TOF and MALDI-TOF/TOF mass spectrometers.

Kuzyk MA, Ohlund LB, Elliott MH, Smith D, Qian H, Delaney A, Hunter CL, Borchers CH.

Proteomics. 2009 Jun;9(12):3328-40. doi: 10.1002/pmic.200800412.

PMID:
19504495
15.

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements.

Lange E, Tautenhahn R, Neumann S, Gröpl C.

BMC Bioinformatics. 2008 Sep 15;9:375. doi: 10.1186/1471-2105-9-375.

16.

Unravelling the complex venom landscapes of lethal Australian funnel-web spiders (Hexathelidae: Atracinae) using LC-MALDI-TOF mass spectrometry.

Palagi A, Koh JM, Leblanc M, Wilson D, Dutertre S, King GF, Nicholson GM, Escoubas P.

J Proteomics. 2013 Mar 27;80:292-310. doi: 10.1016/j.jprot.2013.01.002. Epub 2013 Jan 23.

PMID:
23352897
17.

A statistical method for chromatographic alignment of LC-MS data.

Wang P, Tang H, Fitzgibbon MP, McIntosh M, Coram M, Zhang H, Yi E, Aebersold R.

Biostatistics. 2007 Apr;8(2):357-67. Epub 2006 Jul 31.

PMID:
16880200
18.

LC-MSsim--a simulation software for liquid chromatography mass spectrometry data.

Schulz-Trieglaff O, Pfeifer N, Gröpl C, Kohlbacher O, Reinert K.

BMC Bioinformatics. 2008 Oct 8;9:423. doi: 10.1186/1471-2105-9-423.

19.

Screening for disulfide bonds in proteins by MALDI in-source decay and LIFT-TOF/TOF-MS.

Schnaible V, Wefing S, Resemann A, Suckau D, Bücker A, Wolf-Kümmeth S, Hoffmann D.

Anal Chem. 2002 Oct 1;74(19):4980-8.

PMID:
12380820
20.

Use of MALDI-TOF mass spectrometry fingerprinting to characterize Enterococcus spp. and Escherichia coli isolates.

Santos T, Capelo JL, Santos HM, Oliveira I, Marinho C, Gonçalves A, Araújo JE, Poeta P, Igrejas G.

J Proteomics. 2015 Sep 8;127(Pt B):321-31. doi: 10.1016/j.jprot.2015.02.017. Epub 2015 Mar 6.

PMID:
25753124

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