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Items: 1 to 20 of 150

1.

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature.

Wang X, Rak R, Restificar A, Nobata C, Rupp CJ, Batista-Navarro RT, Nawaz R, Ananiadou S.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S11. doi: 10.1186/1471-2105-12-S8-S11.

2.

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3. doi: 10.1186/1471-2105-12-S8-S3.

3.

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

Lourenço A, Conover M, Wong A, Nematzadeh A, Pan F, Shatkay H, Rocha LM.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S12. doi: 10.1186/1471-2105-12-S8-S12. Erratum in: BMC Bioinformatics. 2012;13:180.

4.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

5.
6.

Classification of protein-protein interaction full-text documents using text and citation network features.

Kolchinsky A, Abi-Haidar A, Kaur J, Hamed AA, Rocha LM.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):400-11. doi: 10.1109/TCBB.2010.55.

PMID:
20671313
7.

Detection of interaction articles and experimental methods in biomedical literature.

Schneider G, Clematide S, Rinaldi F.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S13. doi: 10.1186/1471-2105-12-S8-S13.

8.

Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles.

Tsai RT, Lai PT.

BMC Bioinformatics. 2011 Feb 23;12:60. doi: 10.1186/1471-2105-12-60.

9.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

10.

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4. doi: 10.1186/1471-2105-12-S8-S4.

11.

Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles.

Tsai RT, Hung HC, Dai HJ, Lin YW, Hsu WL.

BMC Bioinformatics. 2008;9 Suppl 1:S3. doi: 10.1186/1471-2105-9-S1-S3.

12.

Classifying protein-protein interaction articles using word and syntactic features.

Kim S, Wilbur WJ.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S9. doi: 10.1186/1471-2105-12-S8-S9.

13.

Classification methods for finding articles describing protein-protein interactions in PubMed.

Matos S, Oliveira JL.

J Integr Bioinform. 2011 Sep 16;8(3):178. doi: 10.2390/biecoll-jib-2011-178.

PMID:
21926441
14.

Feature generation and representations for protein-protein interaction classification.

Lan M, Tan CL, Su J.

J Biomed Inform. 2009 Oct;42(5):866-72. doi: 10.1016/j.jbi.2009.07.004. Epub 2009 Jul 16.

15.

An Overview of BioCreative II.5.

Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

PMID:
20704011
16.

Empirical investigations into full-text protein interaction Article Categorization Task (ACT) in the BioCreative II.5 Challenge.

Lan M, Su J.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):421-7. doi: 10.1109/TCBB.2010.49.

PMID:
20671314
17.

Improving protein-protein interaction pair ranking with an integrated global association score.

Tsai RT.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1690-5.

PMID:
22848135
18.

Classification and prioritization of biomedical literature for the comparative toxicogenomics database.

Vishnyakova D, Pasche E, Gobeill J, Gaudinat A, Lovis C, Ruch P.

Stud Health Technol Inform. 2012;180:210-4.

PMID:
22874182
19.

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases.

Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S8. doi: 10.1186/1471-2105-12-S8-S8.

20.

Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection.

Tsai RT, Lai PT.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S7. doi: 10.1186/1471-2105-12-S8-S7.

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