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Items: 1 to 20 of 135

1.

A population genetics-phylogenetics approach to inferring natural selection in coding sequences.

Wilson DJ, Hernandez RD, Andolfatto P, Przeworski M.

PLoS Genet. 2011 Dec;7(12):e1002395. doi: 10.1371/journal.pgen.1002395. Epub 2011 Dec 1.

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3.

The evolution of small insertions and deletions in the coding genes of Drosophila melanogaster.

Chong Z, Zhai W, Li C, Gao M, Gong Q, Ruan J, Li J, Jiang L, Lv X, Hungate E, Wu CI.

Mol Biol Evol. 2013 Dec;30(12):2699-708. doi: 10.1093/molbev/mst167. Epub 2013 Sep 26.

PMID:
24077769
5.

Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species.

Andolfatto P, Wong KM, Bachtrog D.

Genome Biol Evol. 2011;3:114-28. doi: 10.1093/gbe/evq086. Epub 2010 Dec 20.

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Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations.

Ragsdale AP, Coffman AJ, Hsieh P, Struck TJ, Gutenkunst RN.

Genetics. 2016 May;203(1):513-23. doi: 10.1534/genetics.115.184812. Epub 2016 Mar 30.

10.

The population genetics of the origin and divergence of the Drosophila simulans complex species.

Kliman RM, Andolfatto P, Coyne JA, Depaulis F, Kreitman M, Berry AJ, McCarter J, Wakeley J, Hey J.

Genetics. 2000 Dec;156(4):1913-31.

11.

Adaptive Evolution Is Substantially Impeded by Hill-Robertson Interference in Drosophila.

Castellano D, Coronado-Zamora M, Campos JL, Barbadilla A, Eyre-Walker A.

Mol Biol Evol. 2016 Feb;33(2):442-55. doi: 10.1093/molbev/msv236. Epub 2015 Oct 22.

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13.

Molecular evolution in the Drosophila melanogaster species subgroup: frequent parameter fluctuations on the timescale of molecular divergence.

Akashi H, Ko WY, Piao S, John A, Goel P, Lin CF, Vitins AP.

Genetics. 2006 Mar;172(3):1711-26. Epub 2005 Dec 30.

14.

Detecting consistent patterns of directional adaptation using differential selection codon models.

Parto S, Lartillot N.

BMC Evol Biol. 2017 Jun 23;17(1):147. doi: 10.1186/s12862-017-0979-y.

16.

Intron length evolution in Drosophila.

Presgraves DC.

Mol Biol Evol. 2006 Nov;23(11):2203-13. Epub 2006 Aug 21.

PMID:
16923822
17.

Recent selection on synonymous codon usage in Drosophila.

Kliman RM.

J Mol Evol. 1999 Sep;49(3):343-51.

PMID:
10473775
18.

Population genomic analysis of base composition evolution in Drosophila melanogaster.

Poh YP, Ting CT, Fu HW, Langley CH, Begun DJ.

Genome Biol Evol. 2012;4(12):1245-55. doi: 10.1093/gbe/evs097.

20.

An approximate bayesian estimator suggests strong, recurrent selective sweeps in Drosophila.

Jensen JD, Thornton KR, Andolfatto P.

PLoS Genet. 2008 Sep 19;4(9):e1000198. doi: 10.1371/journal.pgen.1000198.

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