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Items: 1 to 20 of 215

1.

Methods for small RNA preparation for digital gene expression profiling by next-generation sequencing.

Linsen SE, Cuppen E.

Methods Mol Biol. 2012;822:205-17. doi: 10.1007/978-1-61779-427-8_14.

PMID:
22144201
2.

Detection of small RNAs and microRNAs using deep sequencing technology.

Havecker ER.

Methods Mol Biol. 2011;732:55-68. doi: 10.1007/978-1-61779-083-6_5.

PMID:
21431705
3.

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing.

Kawano M, Kawazu C, Lizio M, Kawaji H, Carninci P, Suzuki H, Hayashizaki Y.

Biotechniques. 2010 Oct;49(4):751-5. doi: 10.2144/000113516.

4.

Small RNA library construction for high-throughput sequencing.

McGinn J, Czech B.

Methods Mol Biol. 2014;1093:195-208. doi: 10.1007/978-1-62703-694-8_16.

PMID:
24178567
5.

Gene expression in mouse oocytes by RNA-Seq.

Antoniou E, Taft R.

Methods Mol Biol. 2012;825:237-51. doi: 10.1007/978-1-61779-436-0_18.

PMID:
22144249
6.

Next-generation sequencing of miRNAs with Roche 454 GS-FLX technology: steps for a successful application.

Soares AR, Pereira PM, Santos MA.

Methods Mol Biol. 2012;822:189-204. doi: 10.1007/978-1-61779-427-8_13.

PMID:
22144200
7.

SuperSAGE: powerful serial analysis of gene expression.

Matsumura H, Urasaki N, Yoshida K, Krüger DH, Kahl G, Terauchi R.

Methods Mol Biol. 2012;883:1-17. doi: 10.1007/978-1-61779-839-9_1.

PMID:
22589121
8.
9.

RNA-Seq: revelation of the messengers.

Van Verk MC, Hickman R, Pieterse CM, Van Wees SC.

Trends Plant Sci. 2013 Apr;18(4):175-9. doi: 10.1016/j.tplants.2013.02.001. Epub 2013 Mar 5.

PMID:
23481128
10.

New virus discovery by deep sequencing of small RNAs.

Singh K, Kaur R, Qiu W.

Methods Mol Biol. 2012;883:177-91. doi: 10.1007/978-1-61779-839-9_14.

PMID:
22589134
11.

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3.

PMID:
21431761
12.

Transcriptome analysis using RNA-Seq.

Hoeijmakers WA, Bártfai R, Stunnenberg HG.

Methods Mol Biol. 2013;923:221-39.

PMID:
22990781
13.

A strand-specific library preparation protocol for RNA sequencing.

Borodina T, Adjaye J, Sultan M.

Methods Enzymol. 2011;500:79-98. doi: 10.1016/B978-0-12-385118-5.00005-0.

PMID:
21943893
14.

Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs.

Pradervand S, Weber J, Lemoine F, Consales F, Paillusson A, Dupasquier M, Thomas J, Richter H, Kaessmann H, Beaudoing E, Hagenbüchle O, Harshman K.

Biotechniques. 2010 Mar;48(3):219-22. doi: 10.2144/000113367.

15.

New methods for next generation sequencing based microRNA expression profiling.

Buermans HP, Ariyurek Y, van Ommen G, den Dunnen JT, 't Hoen PA.

BMC Genomics. 2010 Dec 20;11:716. doi: 10.1186/1471-2164-11-716.

16.

Small RNA transcriptome investigation based on next-generation sequencing technology.

Zhou L, Li X, Liu Q, Zhao F, Wu J.

J Genet Genomics. 2011 Nov 20;38(11):505-13. doi: 10.1016/j.jgg.2011.08.006. Epub 2011 Aug 31. Review.

PMID:
22133681
17.

Next-generation sequencing applied to flower development: RNA-seq.

He J, Jiao Y.

Methods Mol Biol. 2014;1110:401-11. doi: 10.1007/978-1-4614-9408-9_23.

PMID:
24395272
18.

Discovery of posttranscriptional regulatory RNAs using next generation sequencing technologies.

Gelderman G, Contreras LM.

Methods Mol Biol. 2013;985:269-95. doi: 10.1007/978-1-62703-299-5_14.

PMID:
23417809
19.

Transcriptomic analysis of Staphylococcus aureus using microarray and advanced next-generation RNA-seq technologies.

Lei T, Becker A, Ji Y.

Methods Mol Biol. 2014;1085:213-29. doi: 10.1007/978-1-62703-664-1_13.

PMID:
24085699
20.

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.

Shiroguchi K, Jia TZ, Sims PA, Xie XS.

Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1347-52. doi: 10.1073/pnas.1118018109. Epub 2012 Jan 9.

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